BAC Information

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BAC

Clone NameMSMg01-115I09
ChromosomeX (Build37)
Map Location 89,383,145 - 89,383,497
singlet/doubletsinglet
Overlap geneMageb18
Upstream geneLOC670074, LOC667972, LOC667976, Mageb2, EG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893
Downstream geneEG436259, EG668061, EG546347, LOC629568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115I09.T7 (MSMg01no115_i09.b1)MSMg01-115I09.TJ (MSMg01no115_i09.g1)
ACCAG327134AG327135
length684708
length of high quality
(start - end)
241 (87 - 327)370 (58 - 427)
definitionCHROMAT_FILE: MSMg01no115_i09.b1 PHD_FILE: MSMg01no115_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:29 2005CHROMAT_FILE: MSMg01no115_i09.g1 PHD_FILE: MSMg01no115_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACGATCCGCGGAATTCTCTCCCTCTGAGACCAAACAGGCACCCCAGCTA
GAAATATCCCAGGGACAGGCAAGACCTTTAGGGACAGGCTGCTACAGTTG
TTTGGGATCCACATGAAGACCAAGCTGCACATCTGCTGTATATGTATGGG
GAGTTGTAGGTCCAGCCTGTGTATGTCCTTTGGTTAGCGGTTCAGACTCT
GAGATCTCCAAGCATCCAGGCTAGTTGACTCTGTTGGTCTTCCTGTGAAG
TTCCTATCCCCTTTAGAGCCACAGTCCTTCACCCTATTCTTCCCTAAGAG
TCCCAATGCTCTGTCTTCTGTTTGGCTATGAGTGCCTGTATCTGTCTGAG
TCACCTACTGGGTGGAACCTCTCAGAGGACAGACATGCTAGACTCATGTC
TGCCAGCATAAAATAACATCATTAATAGTGCCAGGGATTACCGCTTGCCC
ATGGAATGGGTCTCAATTTTGGTTCGATATCGGTTATTCCTTCCCTTAGT
TTCTCCTCCTTCCCCCATGCCTGCATTTTCTATACACAGGATAAATTCTG
GGTCCAATATTTTATTGGCAGTTTGGTACCCCTATCACTCCCCTGAGGTT
CCTGTCTACCTACCGGAGGTGTCTTTTTCACGGCTCCATACCCCTGGTGA
TGCGAATCACAGCTAACGTCCCCCCCCCATTGAT
CTTTTCTTCGATGACAGTGTGTAGCCTGGCGGCCGCCTTTCGAACAATTT
AGGTGAACTATAGATTGCCCGCGGAATTCATATAATGTTACTTCTCTGTA
TGCTTTCGGGGCTGACCTTTTGGCACTGGGAAACGAGTTGATATAATGTT
GGGGTCTCATATAATTTTTCCTGTATAGTTTCACATGTTTATTAGTGTCA
TCTTTGTTCAGAGCATAATTGGGTGATCATGAGAGTTGATGAGGATAATC
TTACACATAGTATATCTATGTGTAGCCAAATAAACTTGGAATTTATGGCC
TAATATTTATTAAATTGGTCAATCATCTTTAAGAAAGCAAAAATAAATAT
AAAATTAAGTGGCATGAAGGTGGGACTTGCTGAAACTTAAAATTTATTAG
CTTCATAGTATACTCATTTGCACTTGAGACATAGTAGAGCCACAAAAAAT
TAAAGAAGGACACAAGTAATTATAATATTCACAAAATTTTCAGGAAAAAA
TGATGTAAAATGAAAACTAGATCATTGGAATTGGACATTTTATGGAAACT
GACTCAGGAATTATTTTTACAAGTACTTCCGCTTTCTCCTGACCTTAGGA
CATGAAATACGACAACTGCATTCTTACAGGCAATATGAACAACTTGGCTT
GCTTTTCATTGAGGTTTTTTTTGTCTACCCCCCTTCCCATAATGGCTTTT
CTGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_i09.g1 MSMg01no115_i09.g1 CHROMAT_FILE:
MSMg01no115_i09.g1 PHD_FILE: MSMg01no115_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:29 2005
         (370 letters)



>mm_chrX_89382929_89383697
          Length = 769

 Score =  646 bits (334), Expect = 0.0
 Identities = 349/354 (98%), Gaps = 1/354 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcatataatgttacttctctgtatgctttcggggctgaccttttggcactgggaaa 76
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 217 gaattcatataatgttacttctctgtatgctttcggggctgaccatttggcactgggaaa 276

                                                                       
Query: 77  cgagttgatataatgttggggtctcatataatttttcctgtatagtttcacatgtttatt 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cgagttgatataatgttggggtctcatataatttttcctgtatagtttcacatgtttatt 336

                                                                       
Query: 137 agtgtcatctttgttcagagcataattgggtgatcatgagagttgatgaggataatctta 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agtgtcatctttgttcagagcataattgggtgatcatgagagttgatgaggataatctta 396

                                                                       
Query: 197 cacatagtatatctatgtgtagccaaataaacttggaatttatggcctaatatttattaa 256
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 397 cacatagtatatctatgtgtagccaaataaatttggaatttatggcttaatatttattaa 456

                                                                       
Query: 257 attggtcaatcatctttaagaaagcaaaaataaatataaaattaagtggcatgaaggtgg 316
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 457 attggtcaatcatctttaagaaag-aaaaataaatataaaattaagtggaatgaaggtgg 515

                                                                 
Query: 317 gacttgctgaaacttaaaatttattagcttcatagtatactcatttgcacttga 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gacttgctgaaacttaaaatttattagcttcatagtatactcatttgcacttga 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 769
Length adjustment: 9
Effective length of query: 361
Effective length of database: 760
Effective search space:   274360
Effective search space used:   274360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)