BAC Information

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BAC

Clone NameMSMg01-115K18
ChromosomeX (Build37)
Map Location 65,339,097 - 65,339,684
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666828, Gm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194
Downstream geneEG236844, LOC385372, LOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115K18.T7 (MSMg01no115_k18.b1)MSMg01-115K18.TJ (MSMg01no115_k18.g1)
ACCAG327244AG327245
length741720
length of high quality
(start - end)
324 (34 - 357)588 (77 - 664)
definitionCHROMAT_FILE: MSMg01no115_k18.b1 PHD_FILE: MSMg01no115_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:40 2005CHROMAT_FILE: MSMg01no115_k18.g1 PHD_FILE: MSMg01no115_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTCAC
CTGATGACTACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCC
TTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGT
GAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGA
CATAGTACTACCGGAGGATCCAGCAGTACCTCTCCTGGGCGTATATCCAG
AAGATGTCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTACCCATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAAC
AGACGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACT
CTGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGAC
CTGGAGGGCCTCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACA
CCATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCC
CAGATATTAGATATAATTTGCCTAAACCATGAAACTCCAGACGAATGAAG
ACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAAC
NNNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCACTGAGAGATATTTTGTTCTA
AGTTGTTTTCTCAGCTATTCTGTCACAGACACAACAAAACCTGACTACCA
GAGATATTGCTCTCAAAGACCCAAGTGACCAAACCTCTGACGAATTCTGA
GATTTTTATCATAAAATTGGAGAATGCATCCCTTTATTGACAGGTTAGCA
TACATCATCAAATATATAGTAAAATAGACAACGCCTCTTCCTCAACAACA
GATTATCTCATGTCAACAGATGTCTAATAAAATATTAATAATAATTTAGG
AATTGCATACAAAAATATTCTAGGAGTTCCATGCAAAATGAAAAACACAA
ATAAAATAAAAGAAATGGGAACAAACAGCATTTAGAGCTATGTGAAACAC
AAAATTGCTACCTATGACCTATATTCTATAATTATACTTATTTAGTTCTG
TCCACATGCATATAACGCATTTTAAAAGACAGGAAAAACAACAGAAAAAT
AAATACTAGAACCAGACTCAGATAAGTCGCAAATTTGTCAATTATCAATT
AGAAGTTTAAAACAACAATGAATATGCTAATGATTCTAAAGGACAAAGTA
TAAAATATGCAACCACAGACAATAAGAAACTATAGGTAGATTGTTTACCA
CTATAGATGTGGTGGGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_k18.g1 MSMg01no115_k18.g1 CHROMAT_FILE:
MSMg01no115_k18.g1 PHD_FILE: MSMg01no115_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:40 2005
         (588 letters)



>mm_chrX_65338897_65339884
          Length = 988

 Score = 1098 bits (568), Expect = 0.0
 Identities = 583/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcactgagagatattttgttctaagttgttttctcagctattctgtcacagacacaaca 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcactgagagatattctgttctaagttgttttctcagctattctgtcacagacacaaca 260

                                                                       
Query: 61  aaacctgactaccagagatattgctctcaaagacccaagtgaccaaacctctgacgaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aaacctgactaccagagatattgctctcaaagacccaagtgaccaaacctctgacaaatt 320

                                                                       
Query: 121 ctgagatttttatcataaaattggagaatgcatccctttattgacaggttagcatacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagatttttatcataaaattggagaatgcatccctttattgacaggttagcatacatc 380

                                                                       
Query: 181 atcaaatatatagtaaaatagacaacgcctcttcctcaacaacagattatctcatgtcaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 atcaaatatatagtaaaatagacaacgcctcttcctcaacaacagattatctcacgtcaa 440

                                                                       
Query: 241 cagatgtctaataaaatattaataataatttaggaattgcatacaaaaatattctaggag 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagatgtctaataaaatattaataataatttaggaattgcatacaaaaatattctaggag 500

                                                                       
Query: 301 ttccatgcaaaatgaaaaacacaaataaaataaaagaaatgggaacaaacagcatttaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccatgcaaaatgaaaaacacaaataaaataaaagaaatgggaacaaacagcatttaga 560

                                                                       
Query: 361 gctatgtgaaacacaaaattgctacctatgacctatattctataattatacttatttagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctatgtgaaacacaaaattgctacctatgacctatattctataattatacttatttagt 620

                                                                       
Query: 421 tctgtccacatgcatataacgcattttaaaagacaggaaaaacaacagaaaaataaatac 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgtccacacgcatataacgcattttaaaagacaggaaaaacaacagaaaaataaatac 680

                                                                       
Query: 481 tagaaccagactcagataagtcgcaaatttgtcaattatcaattagaagtttaaaacaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagaaccagactcagataagtcgcaaatttgtcaattatcaattagaagtttaaaacaac 740

                                                           
Query: 541 aatgaatatgctaatgattctaaaggacaaagtataaaatatgcaacc 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgaatatgctaatgattctaaaggacaaagtataaaatatgcaacc 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)