BAC Information

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BAC

Clone NameMSMg01-116M02
ChromosomeX (Build37)
Map Location 46,810,703 - 46,811,207
singlet/doubletsinglet
Overlap genenone
Upstream geneAifm1, Rab33a, Suhw3, Slc25a14, Gpr119, Rbmx2, LOC665752, Gm595, EG637758, LOC100040295, Enox2
Downstream gene1100001E04Rik, LOC100041697, Olfr1320, Olfr1321, Igsf1, Olfr1322, LOC100040344, Olfr1323, EG665816, Olfr1324
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116M02.T7 (MSMg01no116_m02.b1)MSMg01-116M02.TJ (MSMg01no116_m02.g1)
ACCAG328058AG328059
length711708
length of high quality
(start - end)
509 (55 - 563)520 (82 - 601)
definitionCHROMAT_FILE: MSMg01no116_m02.b1 PHD_FILE: MSMg01no116_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:06 2005CHROMAT_FILE: MSMg01no116_m02.g1 PHD_FILE: MSMg01no116_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCCAAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCCCACTGCCCCTGGGGGCGCATCCCTCTGCACTGG
ACGTGCAGGGAATGCAAGCAGTGACCAGAGCTGCACAGTGACTGTGCAGA
TGGGATCCTTGGGGGAGGGGAATAAGTATTAGGTTCCCTGGAGAATCGAC
AATCCTACCCACCTGTGAGAAGATAGATAATGAACTTATCCATCCACAGC
TCAGCCCAGGTCGTGCAGGAGTAATTTCTGACCTTTCCTGATGTTTAAAG
TGTGGTGAAGGAGAAAACAAAGCACAAAAGAGCCTGGCATTTTGGCACAC
CAGAAACTCCTCAAAGAGAGGCAAGAAGAATGGACAGCAGAAAGAGAAAC
AAGTAAAAGAATAGAGGACAAGGATAAAATAAGGAACAAAGAGGTGAGAA
AAATTCAATAAAACATCACAGAAAACTCATGAAGAATACTATGATCACAG
TTAAAGAGAAAGCCGGAAGGAAGACGCAAGAGAATAAAAAGAAAAGAGAA
GGGAAAAATCAAAATAAAAACAAGTCTTAGAACAAAAGGTTGTGATGAAA
CTGGAGTGCGGGCAGAAAATGAATTTGTATAGCAAATACGTATGTGTGTA
ACTACAAATCTATTTCTGCTCCTAAAGTCTGGAAGGAAAGCAAATAGCAT
CAGAAGAAGAG
ATTTAATAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTTTGACTGCTTTTCAT
AATGAGTTCCAAGCCAGCCAAAGATACATAGTGAGACTGTGTTTCAAAGC
AAACAAACATTAAGGGATTGTAAATTAATCAAAAGAAAGAGAAAGATGAT
ACAAATTAATAAAATTAGAGATGAAAGGGGAGAAATTGCAACAGATAGTG
AGGAAATTCAGGGAATCATGAGGACATTACAAATTCGTGTTCCACTAAAA
AGAAAAATCTAAAATAAGTGGATAAACTTCTAGATACATATGACTTACCA
ACCTTAAGCTAAGGTGAAGTAATATAAAGAAACACATAGCAACCAATGAA
TTATAAGCAGGAATAATAAATCTCCCTGCTAAAAAATTCCCAAGACCAGA
TAGATTCAGCACAGAATACTACCTGTCCATTAAAGAAGAACTAATATCAA
TACTCCTTTCATCATCCCATAAAATAGGGAAGGAAAGAACGTTTCCAAAT
TATTTTTATAAAATCAGTGTTACCCTTATTCTAAAAAGGTGATAAATAAA
TCCAGACCATTCTCCCTGATGAATATAGATGAAAATACTCAATAAAATAT
CTAGATAGCTGCCCATCACATAGTTATCCAGGAATACTAATCAAGGTGTA
CGCTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_m02.b1 MSMg01no116_m02.b1 CHROMAT_FILE:
MSMg01no116_m02.b1 PHD_FILE: MSMg01no116_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:06 2005
         (509 letters)



>mm_chrX_46810499_46811407
          Length = 909

 Score =  930 bits (481), Expect = 0.0
 Identities = 499/505 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccactgcccctgggggcgcatccctctgcactggacgtgcagggaatgcaag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattctcccactgcacctgggggcgcatccctctgcactggacgtgcagggaatgcaag 650

                                                                       
Query: 65  cagtgaccagagctgcacagtgactgtgcagatgggatccttgggggaggggaataagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cagtgaccagagctgcacagtgactgtgcagatgggatccttgggggaggggaataagta 590

                                                                       
Query: 125 ttaggttccctggagaatcgacaatcctacccacctgtgagaagatagataatgaactta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttaggttccctggagaatcgacaatcctacccacctgtgagaagatagataatgaactta 530

                                                                       
Query: 185 tccatccacagctcagcccaggtcgtgcaggagtaatttctgacctttcctgatgtttaa 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tccacccacagctcagcccaggtcgtgcaggagtaatttctgacctttcctgatgtttaa 470

                                                                       
Query: 245 agtgtggtgaaggagaaaacaaagcacaaaagagcctggcattttggcacaccagaaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtgtggtgaaggagaaaacaaagcacaaaagagcctggcattttggcacaccagaaact 410

                                                                       
Query: 305 cctcaaagagaggcaagaagaatggacagcagaaagagaaacaagtaaaagaatagagga 364
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccccaaagagaggcaagaagaatggacagcagaaagagaaacaagtaaaagaatagagga 350

                                                                       
Query: 365 caaggataaaataaggaacaaagaggtgagaaaaattcaataaaacatcacagaaaactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 349 caaggataaaataaggaacaaagaggtgagaaaaattcaataaaacatcacagaaaaatc 290

                                                                       
Query: 425 atgaagaatactatgatcacagttaaagagaaagccggaaggaagacgcaagagaataaa 484
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 289 atgaagaatacaatgatcacagttaaagagaaagccagaaggaagacgcaagagaataaa 230

                                    
Query: 485 aagaaaagagaagggaaaaatcaaa 509
           |||||||||||||||||||||||||
Sbjct: 229 aagaaaagagaagggaaaaatcaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)