BAC Information

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BAC

Clone NameMSMg01-116M18
ChromosomeX (Build37)
Map Location 150,111,814 - 150,112,396
singlet/doubletsinglet
Overlap genenone
Upstream geneShroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253, Mageh1, EG385454, EG436240, Rragb, Klf8, LOC100039932, EG635136, Ubqln2, Cypt3, LOC100039998, LOC667241
Downstream geneKctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116M18.T7 (MSMg01no116_m18.b1)MSMg01-116M18.TJ (MSMg01no116_m18.g1)
ACCAG328090AG328091
length719719
length of high quality
(start - end)
589 (50 - 638)295 (79 - 373)
definitionCHROMAT_FILE: MSMg01no116_m18.b1 PHD_FILE: MSMg01no116_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:09 2005CHROMAT_FILE: MSMg01no116_m18.g1 PHD_FILE: MSMg01no116_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAATGAAATTATGCTTAGTCAAATATTTAATCATTTATTCAT
TCTTTCAAAAATTCCCACCAAATACCTAACATCCAATCATGTAGAACAGG
TCATGATCTTCTAATCACTTCTTATAACTTCTAGGGTCTTCTTGTTACTA
TTCAGTAATAACACAATTTTGAATTTTATTGAACTTTATTTCTCTCACAA
GACCACTGTAAGCTCCATGAGAGTAGTAGTTCATTATGTAAGGTCTATAC
AAAAGAGATATACATAAGGGATTGCAAAAGGGATAATAAATTCCCTACCT
AAATGCCTGAGTCTCTTCCATCAGGACTGGGGACTACGTGATAAAAAAAA
AAGGCAAAATATTAATTACATTCTACACACTTCTATGCTTAGCAACATCT
GACACTAGAGCCAAGCTTCTGTAGGAGTTAATATGTTGATAACAGTATTT
GTTTTTCTGGGCTGAAATTAAATTAAGGATTTACTCTTTCTGGATAGGAA
ACATACAACTATGCATGACCAAACACAGAGCATGGAGTTACTGTACAAGC
AAAGAAAAAAAAAGTGCCCATAGATTAAAAACTAGCAGACACATTAGACA
TAGGATAAGATTGATTATACATATCCATATGAATGTGAGAAGCTTTGGGC
ATTAATTTATAATGAGATN
NNNTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGATCCACTTAGATTTGACC
TTAGTACAAGGAGATAGGAATGAATCAATTCGCATTCTTCTACATGATAA
CTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGTTGTCTTTTTTCCACT
GGATGGTTTTAGCTCCCTTGTCGAAGAACAAGTGACCATAGGTATGTGGG
TTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTATCGCT
ATACCAGTACCATGCAGTTTTTATCACTTTTGCTATGTAGTACAGCTTTA
GATCAGGAATGGTGATTCCACCAGAGGTTCTTTACTCCTTTAGGAGAGCT
TTTGCTATCCTAGGTTTTCGTTATTCCAGATGAATTTGCAGATTCTAATT
AAGATTTCTAATTCTTTGAAGAATTGAGTTGGAATTTTGATGGGGATAGC
ATTGAATCTGTAGATTGCTTTTGGCAAGATAGCCATTTTTACTATATTGA
TCCTGCCCATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTTT
TTAATTTCTTTCTTCAGAGACTTGAAGCTCTTATCATACACATCTTTCAC
TTCCTTAGTTAGAGTCATGCCAAGGTATTTTATCTTATTTGTGACTATTG
AAAAGGGTGTTGTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_m18.b1 MSMg01no116_m18.b1 CHROMAT_FILE:
MSMg01no116_m18.b1 PHD_FILE: MSMg01no116_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:09 2005
         (589 letters)



>mm_chrX_150111610_150112596
          Length = 987

 Score = 1100 bits (569), Expect = 0.0
 Identities = 581/585 (99%), Gaps = 2/585 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgaaattatgcttagtcaaatatttaatcatttattcattctttcaaaaatt 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gaattcaatgaaattatgattagtcaaatatttaatcatttattcattctttcaaaaatt 728

                                                                       
Query: 65  cccaccaaatacctaacatccaatcatgtagaacaggtcatgatcttctaatcacttctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cccaccaaatacctaacatccaatcatgtagaacaggtcatgatcttctaatcacttctt 668

                                                                       
Query: 125 ataacttctagggtcttcttgttactattcagtaataacacaattttgaattttattgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ataacttctagggtcttcttgttactattcagtaataacacaattttgaattttattgaa 608

                                                                       
Query: 185 ctttatttctctcacaagaccactgtaagctccatgagagtagtagttcattatgtaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctttatttctctcacaagaccactgtaagctccatgagagtagtagttcattatgtaagg 548

                                                                       
Query: 245 tctatacaaaagagatatacataagggattgcaaaagggataataaattccctacctaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tctatacaaaagagatatacataagggattgcaaaagggataataaattccctacctaaa 488

                                                                       
Query: 305 tgcctgagtctcttccatcaggactggggactacgtgataaaaaaaaaaggcaaaatatt 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 487 tgcctgagtctcttccatcaggactggggactacgtgat-aaaaaaaaaggcaaaatatt 429

                                                                       
Query: 365 aattacattctacacacttctatgcttagcaacatctgacactagagccaagcttctgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aattacattctacacacttctatgcttagcaacatctgacactagagccaagcttctgta 369

                                                                       
Query: 425 ggagttaatatgttgataacagtatttgtttttctgggctgaaattaaattaaggattta 484
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 368 ggagttaatatgttgataacagtatttgtttttctgggctgaaatcaaattaaggattta 309

                                                                       
Query: 485 ctctttctggataggaaacatacaactatgcatgaccaaacacagagcatggagttactg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctctttctggataggaaacatacaactatgcatgaccaaacacagagcatggagttactg 249

                                                        
Query: 545 tacaagcaaagaaaaaaaaagtgcccatagattaaaaactagcag 589
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 248 tacaagcaaag-aaaaaaaagtgcccatagattaaaaactagcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 987
Length adjustment: 10
Effective length of query: 579
Effective length of database: 977
Effective search space:   565683
Effective search space used:   565683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)