ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAAT
TCCACTGTATTGCCCCATCAAGTACAATGGGAACAGAGAGTAGGGGCTGG
TCCGGGGAAAGAGAAAGGGGCCAATCAGTCATTTTATCCTTCCTCTCAGG
TAGCAGTTTATTTTGGTTCAAGAAACAAATATACTTTCTTTCAATGAATT
TTATAAGTGAACAGGAAATATTTCCATCTCTCAGAACTGCCTGTGGAAAT
TTTATTGTGGTTATAGGAGTTTTTTTGGGTCTATTTTCCGAAGAACAATT
AAAGCCAGGTATGTTTAAACATACCTGTATTAGCACCAACACGGAATGCT
GAACCGCAACACTCTATCACTTCCTAGAGAATACATAACATACTAAGTGC
CTACCTCAACACTAAAATGAAGTGAAATAAAATCAAACAAATGTACCTTC
GATAATTGTATCTAGTGCATTGGGAAGTTTATAAGATAATGAATCAAAAA
ATTCAATTATCTTTATGATAAAAATAATTAGAAATGTTATGAAGGTTAAA
CAATTACTACAAGAAGGGGGAGGGAGAGACCTGGGTGAGAAACCACACAC
GGAGGGGAAGAGATGAACTTGATCAAGTACTGTGGGGGGTTGTGAAACAG
GAGTGTATTGATGAAGATCAGCAAAAAGAATGGAAACAGGCAACTTTGTG
AGGTAGGAGGCGAGATAACCCTCTAGAAAGTACCACAGAC

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTATGTTCAACACCATTTTGTCTGGAAGAG
AATGAAGAGGAAACCATATTTTTATGAAACTTAATAAATAAGTTTTCTCC
ACTTAAGAATAAGAACAAATTTGTTGTTAGAGTTATAACATCTCTCTTTT
CAAAGAGACCATCTCATTACAGACATGTGTTCATTCCAACTACGAAATAA
CTAATATAATAATGTAAACTTTTAGTTATCTTCCAATATTGGTAAATATT
TACAATTCAACTGATTTGGTAATTCAATTCAAAACTGACATTACCAATTT
GAAAATTAAATAACTGTTTATTAAAATTACTAAGGTATAAAAATAAGTAT
GATTGCTATCAGAAAATATTGCCTTAATAAAATTAACATAAGTGAAGTAA
CAATTTTACTTAATATAGATTGTATCTCATATTCATCAATACTATTTTAA
GATATTATAGTCTTCATTTTATGCATCTGGGATTAGATGACATGCTGAAT
TTCAGTGCCTGAAATAATAACTAGAGATGTTAGATGACTGGGAGGAAACT
GGAATTGATTTTTATACTTATTGTGTTTTTATAATACTAATATTAGATCA
ATTGCTTACTACACTAAAGCTTTTTGATTCACTTTTTTTCAATTTTTAAA
TCTTATGTTACCTCTTATACTACATAGCAAGGA

Query= MSMg01no117_e18.b1 MSMg01no117_e18.b1 CHROMAT_FILE:
MSMg01no117_e18.b1 PHD_FILE: MSMg01no117_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:48 2005
         (592 letters)



>mm_chrX_53409726_53410718
          Length = 993

 Score =  360 bits (186), Expect = e-103
 Identities = 429/520 (82%), Gaps = 38/520 (7%)
 Strand = Plus / Minus

                                                                       
Query: 26  caagtacaatgggaacagagagtaggggctggtccggggaa-agaga-aaggggccaatc 83
           |||| ||||||||||||||||| ||||||||| ||  |||| || || | ||||| ||||
Sbjct: 510 caagaacaatgggaacagagagaaggggctgggcc-tggaacagtgagatggggctaatc 452

                                                                       
Query: 84  agtcattttatccttcctctcaggtagcagtttattttggttcaagaaacaaatatactt 143
           |||| ||||||||| |||| ||| |||||||||| |||| ||||||||||||||||||||
Sbjct: 451 agtccttttatcctgcctcacagttagcagtttagtttgtttcaagaaacaaatatactt 392

                                                                       
Query: 144 tctttcaatgaattttataagtgaacaggaaatatttccatctctcagaac--tgcctgt 201
           |||||||||||||||| |||||||||||||||||||| |||||||||  ||  || | ||
Sbjct: 391 tctttcaatgaattttgtaagtgaacaggaaatattttcatctctca--acgctgacggt 334

                                                                       
Query: 202 ggaaattttattgtggttataggagtttttttgggtctattttccgaagaacaat-taaa 260
           |  |||||||| ||| ||||||||| ||||||||| ||||||||  ||||||||| ||| 
Sbjct: 333 gttaattttatagtgtttataggagattttttgggactattttcttaagaacaatgtaa- 275

                                                                       
Query: 261 gccaggtatgtt-taaacatacctgt-attagcaccaacacggaatgctga----acc-- 312
           ||| |||||||| | | ||||||||| || | |||| ||| ||||||||||    |||  
Sbjct: 274 gcctggtatgttgtca-catacctgtgataa-cacctacatggaatgctgagatcacctt 217

                                                                       
Query: 313 gcaac----ac--tctatcac-ttcctagagaatacataacatactaagtgcctacctca 365
           | |||    ||  ||||  || || || || |||||| ||||||||||| ||||| ||||
Sbjct: 216 g-aacctggacattctag-acgtttcttgacaatacacaacatactaagagcctatctca 159

                                                                       
Query: 366 acactaaaatgaagtgaaataaaatcaaacaaatgtaccttcgataattgtatctagtgc 425
           | | | ||||||| |||||||||||||||| ||||||||| | ||| |||||||| || |
Sbjct: 158 aaagtcaaatgaaatgaaataaaatcaaaccaatgtacctgctatatttgtatctcgtac 99

                                                                       
Query: 426 att-gggaagtttataagataatgaatcaaaaaa------ttcaattatctttatga-ta 477
            || ||||| |  |||||||||||||||||||||      ||||||||||||||||| ||
Sbjct: 98  ctttgggaacta-ataagataatgaatcaaaaaaagtaatttcaattatctttatgaata 40

                                                   
Query: 478 aaaataattagaaatgttatgaaggttaaacaattactac 517
           |||||||||| |||||||| |||||||||| ||| |||||
Sbjct: 39  aaaataattataaatgttaagaaggttaaaaaat-actac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space:   572106
Effective search space used:   572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)