BAC Information

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BAC

Clone NameMSMg01-118B16
ChromosomeX (Build37)
Map Location 123,442,797 - 123,443,146
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665611, EG626048, LOC100040410, LOC100039903, LOC665679, 4932411N23Rik, Gm381
Downstream geneLOC100040472, Gm382, 4921511C20Rik, 4930412D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118B16.T7 (MSMg01no118_b16.b1)MSMg01-118B16.TJ (MSMg01no118_b16.g1)
ACCAG329066AG329067
length708710
length of high quality
(start - end)
486 (50 - 535)343 (77 - 419)
definitionCHROMAT_FILE: MSMg01no118_b16.b1 PHD_FILE: MSMg01no118_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:51 2005CHROMAT_FILE: MSMg01no118_b16.g1 PHD_FILE: MSMg01no118_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATGCGC
GGAATTCTTTGTATAGCTCCGTGCCCCATTTTTTAAATAGGCTTATTTGA
TTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATGTTGGCTATTAGCC
CCTATCTTGATTTAGGATTGGTAAAGATCCTTTCCTAATTTTTGATGGCC
TTTTTGTCTTATTGTCAGTGTGTTTTACCTTACAGACAAATTTTATGAGG
TCCCATTTATCAATTCTTGATCTTTGAGCACAAGCCATTGCTGTTCTGTT
CAGGAATCTTTCCCCTGTACCCATATCTTCCAGGTTTTTCCCCACTTTCT
CCTCTATAAGTTTTTGCTTCTCTGGTTTTAGGTGGAATTCCTGGATCCAC
TTAGACTTGAGTTTTGTACAAGGAGATAGGAATGGATCAATTTGCATTCT
TCTACATGATAACGGCCAGTTCTGCCAGCACCATTTGTTGAAGATGCTGT
CTTTTTTCCACTGGATGGTTTTTGCTCCCTTGTCAAAGATCATAGTGACC
ATACATGTGTGTTTTCATATCTGGCTCGCCAACTCCATTACATTGGCCTA
CCTGTCTGTCACTGCACAAGTACCATGCAGTTTTCACTCACAATTGCTCT
GTAATGCAGCTCGAGGTCAGGCATGGTGATCTCACCAGAGGCTCTTTAAT
CATTGACA
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATACAGTTCCAATAGTAAAATC
TGAATGTTAAGAGTTGAAAGAATGCAATAAGTTTACAAAGTACTCAAGGG
TATTCATTTGATGATACCTACATGAATTATGGACATGCAAATATTGAAAC
TAGGAGATAGCATTTTACATTTAAAGAGTGAATAGTGGTCATTTTAGTGA
TATTCCAAGTTATGAGAAGGATAATGAGTCAGAAAAATATTTGAGTTTGC
TATGAACATAAATGAGGTGTTTTGGGGAATTAAATGAAAAATATAGTATT
ATATCTTAACATGTGTAGATCTCAATACCGAAACAAGAAACAGGTTTATC
CATTGGACAGCCTATACAATAACACCTTCATGTAATTTCTATATCAGGCA
AGATTTGCAAAATTTGAATATGTAATTTTTCTCTAATTTCTCAGCATGTA
TTAGTTATTTATTATAAATTTCAATGTAATCTTTTCATATACATGAATAT
TTTAATATATTCTATCTGTAATACTCTAAGAGATATGCTTTTGAAGATTA
TGAAAGTAGCAAGCATTGGATAACTGCAGAATCTTTAGAGACTTAAAAAT
AATATTTTGCAGTTATAGCTCGCACTACATACCTGGTACTGACTACAAGA
ACCATGACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_b16.g1 MSMg01no118_b16.g1 CHROMAT_FILE:
MSMg01no118_b16.g1 PHD_FILE: MSMg01no118_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:51 2005
         (343 letters)



>mm_chrX_123442597_123443346
          Length = 750

 Score =  619 bits (320), Expect = 0.0
 Identities = 340/350 (97%), Gaps = 7/350 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatacagttccaatagtaaaatctgaatgttaagagttgaaagaatgcaataagtttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 taatacagttccaatagtaaaatctgaatgttaagagttgaaagaatgcaataagtttac 491

                                                                       
Query: 61  aaagtactcaagggtattcatttgatgatacctacatgaattatggacatgcaaatattg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 490 aaagtactcaagggtattcatttgatgatacctagatgaattatggacatgtaaatattg 431

                                                                       
Query: 121 aaactaggagatagcattttacatttaaagagtgaatagtggtcattttagtgatattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaactaggagatagcattttacatttaaagagtgaatagtggtcattttagtgatattcc 371

                                                                       
Query: 181 aagttatgagaaggataatgagtcagaaaaatatttgagtttgctatgaacataaatgag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 370 aagttatgagaaggataatgagtcagaaaaatatttgagtttgctatgaagataaatgag 311

                                                                       
Query: 241 gtgttttggggaattaaatgaaaaatatagtattatatcttaacatgtgtagatctc--- 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 310 gtgttttggggaattaaatgaaaaatatagtattatatcttaacatgtgtagatctcaaa 251

                                                             
Query: 298 --aataccgaaacaagaaac--aggtttatccattggacagcctatacaa 343
             ||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 250 agaataccgaaacaagaaactgaggtttatccattggacagcctatacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 750
Length adjustment: 9
Effective length of query: 334
Effective length of database: 741
Effective search space:   247494
Effective search space used:   247494
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)