BAC Information

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BAC

Clone NameMSMg01-118P07
ChromosomeX (Build37)
Map Location 39,617,517 - 39,617,763
singlet/doubletsinglet
Overlap geneStag2
Upstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4
Downstream geneLOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118P07.T7 (MSMg01no118_p07.b1)MSMg01-118P07.TJ (MSMg01no118_p07.g1)
ACCAG329695AG329696
length708691
length of high quality
(start - end)
248 (92 - 339)405 (78 - 482)
definitionCHROMAT_FILE: MSMg01no118_p07.b1 PHD_FILE: MSMg01no118_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:57 2005CHROMAT_FILE: MSMg01no118_p07.g1 PHD_FILE: MSMg01no118_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCTTATTTTTNNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCTAAATTGCATATGAAGGTTTGTAAGA
AAGATAAGACATAAGGATGTTTCTTGAATATGATTGCCCCCCTTAAAAAT
CTTTTCTTTAAAATTTTTGCTGAGTCACCAATTCATTCCTTTATATTATT
AGCAATACTTTATATATTTATATATCTTATAAATAGATTATTAAATTAGA
ATTTTTATAGGAAATAGAAGTGATCTTTTTAGATATTTGGATTAGAGCTA
TATAAATTGCCATTAGTAAATTAATGTAATGAAAGATTAATGCCAGGTCG
GTAAAAGATGACTCTGAACATGCGCAGTTTATGTCTAAGCCCTGTATCAC
TTGGGTAGTACCACACTTACCCTCAAAAGTTCTCTTTCAAAATGTGTGCA
TATACATGAAATTGGTGTACAGGACATACACACACAGCCTTGTCAAAAAT
AGCTTTCCTGGTTGGAGAGATGTCTCAGTGGTTAATAGCACTGACTGCTC
TTCCAAAGGACCCAAGTTCAATTCCCAGCAACCATATGGCGGCTCACTAC
TATCTGTAATGGGATCTGATGCCATCTTCTGTTGCGTCTGATGACAGATA
TTGTGTACATGTACATTAATTAAATAATTCTTTCTTAAAAATTGCTTTCT
TTCAAATT
TTTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACGGAATGGC
TGAGAAGCACCTGAAACAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCTTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGAAACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGCTGGTGGGATTGCAGGATTGTACAACTGGAAGTCA
GTCTGGAGGTTCCTCAGAAAAATGGACATAATAGTACTGGAATATCCAGC
AATACCTCTCCTGAGCATATACCCAGAAGAAGTTCCAACCGGTAAGAAGG
ACACATGCTCTACTATGTTCATCGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGTCCCTCAACAGAAGAATGGATACCGAAAATGGG
GTACATTTACACAATGGAGTACTACTCGCCTATTAAAAACAATGAATTTA
TGAAATTCTTAGGCAAATGGATGAAACTAGAATATATCATCCTGAGTGAG
GTAACCCATTCTCAAACGAACACTCATGATAGGCACTCACTGATAAGTGG
ATATTAGCCTAGAAGCTCGCAATACTCAAGATACAATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_p07.b1 MSMg01no118_p07.b1 CHROMAT_FILE:
MSMg01no118_p07.b1 PHD_FILE: MSMg01no118_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:57 2005
         (248 letters)



>mm_chrX_39617317_39617965
          Length = 649

 Score =  439 bits (227), Expect = e-128
 Identities = 242/251 (96%), Gaps = 9/251 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtaagaaag-ataagacataaggatgtttcttgaatatgattgc----cccccttaa 55
           |||||||||||| ||||||||||||||||||||||||||||||||||    |    ||||
Sbjct: 201 tttgtaagaaagtataagacataaggatgtttcttgaatatgattgcaaatc----ttaa 256

                                                                       
Query: 56  aaatcttttctttaaaatttttgctgagtcaccaattcattcctttatattattagcaat 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaatcttttctttaaaatttttgctgagtcaccaattcattcctttatattattagcaat 316

                                                                       
Query: 116 actttatatatttatatatcttataaatagattattaaattagaatttttataggaaata 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actttatatatttatatatcttataaatagattattaaattagaatttttataggaaata 376

                                                                       
Query: 176 gaagtgatctttttagatatttggattagagctatataaattgccattagtaaattaatg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaagtgatctttttagatatttggattagagctatataaattgccattagtaaattaatg 436

                      
Query: 236 taatgaaagat 246
           |||||||||||
Sbjct: 437 taatgaaagat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space:   152960
Effective search space used:   152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)