BAC Information

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BAC

Clone NameMSMg01-119M23
ChromosomeX (Build37)
Map Location 161,692,196 - 161,692,806
singlet/doubletsinglet
Overlap geneGlra2
Upstream geneBmx, Pir, Figf, Piga, Asb11, Asb9, Mospd2, Fancb, LOC627045
Downstream geneLOC100040753, Gemin8, Gpm6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119M23.T7 (MSMg01no119_m23.b1)MSMg01-119M23.TJ (MSMg01no119_m23.g1)
ACCAG330337AG330338
length715712
length of high quality
(start - end)
506 (71 - 576)611 (71 - 681)
definitionCHROMAT_FILE: MSMg01no119_m23.b1 PHD_FILE: MSMg01no119_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:03 2005CHROMAT_FILE: MSMg01no119_m23.g1 PHD_FILE: MSMg01no119_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAATCCGCGGAAT
TCACAACAGAGTTACCTTGAATGGCCAAGAAGCACTTAAATAAATGTTCA
AAAGTCCTTAGTGATCAGGGAAATACAAATCAAAATGATCCTGAGATTCC
ACTTACACCAATCAGAATGGCTGAGATCAAAACCTCAGGTGACAACACAT
GCTTGAGAGGATGTGGAGAAAGAGGAACACTTCTCCATTGATGGTGGGAT
TGCAAGCTGGTGCAACTCTGGAAATCAATATGGAGGTTCCTCAGAAAATT
GGAAATAGATCTACCTGAAGACCTATATATACCACTCTTAGACATATACC
CAAAAGATGCCCCACTATGTCACAGGGGCCCTTGATGCAGTATGTTCATA
TAGCCTTATTTGTAATAGACAGAAGCTGGAAACAACCCAAATGTCCCACA
ACAGAAGAATGGACACAGATGTGTTTCATTTACATAATGTAATACTACTA
AGCTATTAAGAAAGAGGACATCATGAGTTTTGCAGGCAAATGGATGGAAC
TAGATAATATCATCCTGATCCCGAGTAAAGTAACTCAGACCCCAAAGGAC
ATGCATGGTGATGTACTCACTAATAAGCAGATATTAGCCAACACAAGCAC
AGAATACCCAGGATACAATCCACAGAACTCAAGAAGATTAACAACCTGAA
TGGTCCACGTTGAGA
ATGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCTCAGTAATTAACAAAAGGCTCCTACA
AGTAAAGCTAACACTCCAGAAGAAGCCAAATATGCAATGGTAATACTTGC
AGGCCGGCCTATAATGAATTCATTCTCATTAAACATTTCAAAAGAAGTGG
CTTTATTTGAGATACTAAGACAGCACCACAAATTGGATTGTCTTATTGAA
CTGCCACAGACACAGCTCTTTCAAGTGAAGAAAATCTTCAAACGGTTTCG
GTGCTTGTTTACTTGTTTGCTCTTCAGAGAGGGTTAGTGAATAAAGAGGC
CAGAGATAAAAGATTCTATAGATTCCTTTCTCTCGTTATCCACACGAAAA
AAATTAATCAGAAATACCTTGCTGTGTTCAGTTTCTCTGTGTCATCAGAC
ACGTAGTTATGATGACTACAGCAGCTCTTATAAAAACTGTACCTGAAATG
ATTCCTTCCCCTGCTTGCCCACCTGTCATTACATTTTGCCTTTTCTCAGA
AAAGATACATTGCTTGTTACTACTTCTTTCCTCCAGTTGGGTACACCATG
AATGACCTGATATTTGAGTGGTTAAGTGACGGTCCAGTACAAGTTGCTGA
AGGACTCACCTTGTCTCAGTTTATTTTGAAAGAAGAGAAGGAGCTTGGCT
ATTGCACAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_m23.g1 MSMg01no119_m23.g1 CHROMAT_FILE:
MSMg01no119_m23.g1 PHD_FILE: MSMg01no119_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:04 2005
         (611 letters)



>mm_chrX_161691996_161693006
          Length = 1011

 Score = 1143 bits (591), Expect = 0.0
 Identities = 606/611 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctcagtaattaacaaaaggctcctacaagtaaagctaacactccagaagaagccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 actctcagtaattaacaaaaggctcctacaagtaaagctaacactccagaagaagccaaa 752

                                                                       
Query: 61  tatgcaatggtaatacttgcaggccggcctataatgaattcattctcattaaacatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tatgcaatggtaatacttgcaggccggcctataatgaattcattctcattaaacatttca 692

                                                                       
Query: 121 aaagaagtggctttatttgagatactaagacagcaccacaaattggattgtcttattgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaagaagtggctttatttgagatactaagacagcaccacaaattggattgtcttattgaa 632

                                                                       
Query: 181 ctgccacagacacagctctttcaagtgaagaaaatcttcaaacggtttcggtgcttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctgccacagacacagctctttcaagtgaagaaaatcttcaaacggtttcggtgcttgttt 572

                                                                       
Query: 241 acttgtttgctcttcagagagggttagtgaataaagaggccagagataaaagattctata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acttgtttgctcttcagagagggttagtgaataaagaggccagagataaaagattctata 512

                                                                       
Query: 301 gattcctttctctcgttatccacacgaaaaaaattaatcagaaataccttgctgtgttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gattcctttctctcgttatccacacgaaaaaaattaatcagaaataccttgctgtgttca 452

                                                                       
Query: 361 gtttctctgtgtcatcagacacgtagttatgatgactacagcagctcttataaaaactgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtttctctgtgtcatcagacacgtagttatgatgactacagcagctcttataaaaactgt 392

                                                                       
Query: 421 acctgaaatgattccttcccctgcttgcccacctgtcattacattttgccttttctcaga 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acctgaaatgattccttcctctgcttgcccacctgtcattacattttgccttttctcaga 332

                                                                       
Query: 481 aaagatacattgcttgttactacttctttcctccagttgggtacaccatgaatgacctga 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaagatacattgtttgttactacttctttcctccagttgggtacaccatgaatgacctga 272

                                                                       
Query: 541 tatttgagtggttaagtgacggtccagtacaagttgctgaaggactcaccttgtctcagt 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct: 271 tatttgagtggttaagtgatggtccagtacaagttgctgaaggactcaccttgccccagt 212

                      
Query: 601 ttattttgaaa 611
           |||||||||||
Sbjct: 211 ttattttgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)