Query= MSMg01no120_e12.b1 MSMg01no120_e12.b1 CHROMAT_FILE:
MSMg01no120_e12.b1 PHD_FILE: MSMg01no120_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:40 2005
(638 letters)
>mm_chrY_2780257_2781294
Length = 1038
Score = 988 bits (511), Expect = 0.0
Identities = 615/673 (91%), Gaps = 39/673 (5%)
Strand = Plus / Plus
Query: 5 gaattcctgatgttccctggttatgggttgggagtgaatgctggaccaagactcttctct 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgatgggcaatggttatgggttgggagtgaatgctggaccaagactcttctct 264
Query: 65 acgagaacttctgagcaggtgaaaaagactatgctaaacagatttgagctcctaaaatta 124
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 265 aagagaacttctgagcaggtgaagaagactatgctaaacagttttgagctcctaaaatta 324
Query: 125 attttataaaaataagaagttaataagtcagccatggtggtacatgcatttaatcccaga 184
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 attttataaaaataagaagttaataagtcagccatggtggtacacacatttaatcccaga 384
Query: 185 actcagaaggc-aaggacaggcagatttctaaattagagaccagcctggtctacaaagtg 243
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcagaaggcaaaggataggcagatttctaaattagagaccagcctggtctacaaagtg 444
Query: 244 agttccagggcagtcagagctatagagaggaaccctgtctcaacaac------------- 290
||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 445 agttccagggcagccagtgctatagagaggaaccctgtctcaacaacaacaacaacagca 504
Query: 291 -------------aaacaacaacaacaacatcaagtaaaagaaaacaaacgaaaatcaaa 337
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 acaagaacaacaaaaacaacaacaacaacagcaagtaaaagaaaacaaacgaaaatcaaa 564
Query: 338 cgaaaaacaaacaaaacagaaatacaaacaaaaaataacaaaacaaacaatcaaatggag 397
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgaaaaacaaacaaaatagaaatacaaacaaaaaataacaaaacaaacaatcaaatggag 624
Query: 398 aagttaataggaagtggtagtgacccataactttaatcatagtactcaagaggcagagtg 457
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 625 aagttaataggaagtggtggtgacccataactttaatcatagtactcaagaggcagagcg 684
Query: 458 aggcagaccttagtgagagaaagacaagtctggtctacacagtgagtttcctgacagcca 517
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||
Sbjct: 685 aggcagaccttagtgagataaaggctagtctggtctacacagtgagtttcctgacagcca 744
Query: 518 aatctaaacatacagaaactcaaataaaattaaccaagcaagcaaacaaa----caaaca 573
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 745 aatctaaacatacagaaactcaaataaaattaaccaagcaagcaaacaaagaaacaaaca 804
Query: 574 aagaaacaaag--------gaaacaaggaaataaaaatagtgtaattaacaagtaattct 625
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aagaaacaaagaaacaagggaaacaaggaaataaaaatagtgtaattaacaagtaattct 864
Query: 626 ctagagctcagaa 638
|||||||||||||
Sbjct: 865 ctagagctcagaa 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_e12.g1 MSMg01no120_e12.g1 CHROMAT_FILE:
MSMg01no120_e12.g1 PHD_FILE: MSMg01no120_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:40 2005
(609 letters)
>mm_chrX_53202739_53203753
Length = 1015
Score = 236 bits (122), Expect = 4e-66
Identities = 220/258 (85%), Gaps = 14/258 (5%)
Strand = Plus / Minus
Query: 1 ttcctactc-aagtctttggagacaacagggat----tttactgggttctcatggagaat 55
||||||||| || |||||||||||||||||||| ||| | ||||||||||| |||
Sbjct: 454 ttcctactcaaattctttggagacaacagggattccattt--t--gttctcatggataat 399
Query: 56 gggagagtgtttgtgctccattaaaaaggtactcacattcactattttgatgcctttctt 115
||| ||| |||||||||||||||||| || || |||||||| | |||||||||| |
Sbjct: 398 gggggagaatttgtgctccattaaaaaagtccttacattcacaaatttgatgcctgcccg 339
Query: 116 tctatttgagtgtgctttggacttttgtctgctatgtgttgtgttctgtgttctttgtta 175
| ||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||
Sbjct: 338 tgtatttgagtgtgctttgtacctttgtctgctgtgttttgtgttctgtgttctttgtta 279
Query: 176 ctaactctagggttcttcccatacttggaaaatgaaa-g----tcagtttgaaaaccttt 230
||||||||| ||| ||| ||||||||| ||||||||| | ||| |||||||||||||
Sbjct: 278 ctaactctatggtccttaccatacttgcaaaatgaaacgcttctcaatttgaaaaccttt 219
Query: 231 catatttgttctctgtat 248
||||||||||||||||||
Sbjct: 218 catatttgttctctgtat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1015
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1005
Effective search space: 601995
Effective search space used: 601995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
