Query= MSMg01no120_k02.b1 MSMg01no120_k02.b1 CHROMAT_FILE:
MSMg01no120_k02.b1 PHD_FILE: MSMg01no120_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:08 2005
(570 letters)
>mm_chrX_39739478_39740449
Length = 972
Score = 1004 bits (519), Expect = 0.0
Identities = 553/565 (97%), Gaps = 3/565 (0%)
Strand = Plus / Plus
Query: 5 ggaattcatagtttc-tccatgctgggcaagtgctctacagccctgagctacacttgtag 63
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatagttgcatacatgctgggcaagtgctctacagccctgagctacacttgtag 263
Query: 64 cctttcttgagcttctcttatgtgcatatccctcatagtgaatgcgtgtgctttcctcat 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 cctttcttgagcttctcttatgtgcatatccctcatagtgaatgcgtgtgccttcctcat 323
Query: 124 tccctgatgtccacagaagctttttgttcttagatcaaacttgcctatactgcttatgtt 183
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tccctgatatcctcagaagctttttgttcttagatcaaacttgcctatactgcttatgtt 383
Query: 184 ggccttgaactcgtaggcccaagaaaatctcccagtattagcctctgatgtaactgggac 243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 ggccttgaactcgtaggcccaagaaaatctccctgtattagcctctgatgtaactgggac 443
Query: 244 tacatgctctgttccatgaagaaagtaatgggacaggttgcgatccaactccttaaggat 303
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 444 tacatgctctgttccatgaagaaagtaattggacaggttgtgatccaactccttaaggat 503
Query: 304 aaggttcttattgcctcacacaatctgtgccaaagcacaatctgtagttcacatgactat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaggttcttattgcctcacacaatctgtgccaaagcacaatctgtagttcacatgactat 563
Query: 364 tgacagtctg--ggtggaggatggattttgatctgccttgttattttctctcaagaaaca 421
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 tgacagtctgtgggtggaggatggatcttgatctgccttgttattttctctcaagaaaca 623
Query: 422 aatcaacaaccattttatgccaccaaacaaaacctccagtaccaagaatccattacatct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatcaacaaccattttatgccaccaaacaaaacctccagtaccaagaatccattacatct 683
Query: 482 tgttgagtcattggataaaagggagccataaaacccctaaacatcacaagctattaccaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgttgagtcattggataaaagggagccataaaacccctaaacatcacaagctattaccaa 743
Query: 542 aactattggttaccttccacaacct 566
|||||||||||||||||||||||||
Sbjct: 744 aactattggttaccttccacaacct 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 972
Length adjustment: 10
Effective length of query: 560
Effective length of database: 962
Effective search space: 538720
Effective search space used: 538720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_k02.g1 MSMg01no120_k02.g1 CHROMAT_FILE:
MSMg01no120_k02.g1 PHD_FILE: MSMg01no120_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:08 2005
(242 letters)
>mm_chrX_39895953_39896595
Length = 643
Score = 462 bits (239), Expect = e-135
Identities = 242/243 (99%), Gaps = 1/243 (0%)
Strand = Plus / Minus
Query: 1 ttcctaggaaaag-agaagatattttctttccccctgggtaatcagtatctcttagatac 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttcctaggaaaagtagaagatattttctttccccctgggtaatcagtatctcttagatac 384
Query: 60 aagagatgatggcacacatggcaaagaggggacaatttgtgtgcttctgatacaaccatc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagagatgatggcacacatggcaaagaggggacaatttgtgtgcttctgatacaaccatc 324
Query: 120 aaagtttggttttcgagaagtggtgtgcccataaacagctattacttcgcagaggtggta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaagtttggttttcgagaagtggtgtgcccataaacagctattacttcgcagaggtggta 264
Query: 180 gttgaagcactgccctccctgagaattgcctatgtgataaagcaaacttagtagcctctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttgaagcactgccctccctgagaattgcctatgtgataaagcaaacttagtagcctctc 204
Query: 240 agg 242
|||
Sbjct: 203 agg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space: 147722
Effective search space used: 147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
