Query= MSMg01no122_m19.b1 MSMg01no122_m19.b1 CHROMAT_FILE:
MSMg01no122_m19.b1 PHD_FILE: MSMg01no122_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:40 2005
(746 letters)
>mm_chrX_82381208_82382349
Length = 1142
Score = 1338 bits (692), Expect = 0.0
Identities = 730/746 (97%), Gaps = 9/746 (1%)
Strand = Plus / Minus
Query: 4 ggaattcctgagtgtgtgaaccct--gtaactctgatttcttgtgccttctcttgggctc 61
||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 1075 ggaattcctgagtgtgtgaacaatgggt--ctctgatttcttgtgccttctcttgggctc 1018
Query: 62 tttcccttctatatgtttgtcttgtccaacttaaatgggatactttttatttcttcttat 121
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 ttttccttctatatgtttgtcttgtccaacttaaatgggatactttttatttcttcttat 958
Query: 122 tatata-tttttttaaaaaaatgatctacctaatttttacttactttgatttcttatgtg 180
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tatatatttttttttaaaaaatgatctacctaatttttacttactttgatttcttatgtg 898
Query: 181 cttagctgcctacgatcttttcataatttctggacatactttgtacgaatgaaccacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 cttagctgcctacgatcttttcataatttctggacatactttgtacgaatgaaccacatt 838
Query: 241 ctccacagatgatttcttcttttggtattgacaaaaatagagaggcactacttactctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ctccacagatgatttcttcttttggtattgacaaaaatagagaggcactacttactctaa 778
Query: 301 aaccattctaaattgaatatattgcatggcatctttagtagaatacagctactaagtgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aaccattctaaattgaatatattgcatggcatctttagtagaatacagctactaagtgaa 718
Query: 361 gtgccatcacatcctgcccctttcagcacatactttgctaataaaggatctagctacatc 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 717 gtgccatcacatcctgcccctttcagcacatactttgctattaaaggatctagctacatc 658
Query: 421 atgttagaatgacaagtagaattggaccaaggctccatttactttgtaacacttgacccc 480
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 657 atgtcagaatgacaagtagaattggatcaaggctccatttactttgtaacacttgacccc 598
Query: 481 actgcagcagtactctagtccttactaactcctaatgacaaatgtaacaccaaattaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 actgcagcagtactctagtccttactaactcctaatgacaaatgtaacaccaaattaatg 538
Query: 541 agctttttagccttgggattgccttgttacaaaatggtattgatgcaatccactgatcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agctttttagccttgggattgccttgttacaaaatggtattgatgcaatccactgatcaa 478
Query: 601 aaagatctgccaatccctttcccctatgtcagagtcatcacagacaaactgggatatttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 477 aaagatctgccaatccctttcccctatgtcagagtcatcacagacaaactgggat----t 422
Query: 661 ttttttaaggaatcatttagattcttaatggaaagatgaaaaaaagatcatgcaagtcat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttttaaggaatcatttagattcttaatggaaagatgaaaaaaagatcatgcaagtcat 362
Query: 721 ttcattgttttcaaaggaccggcatc 746
||||||||||||||||||||||||||
Sbjct: 361 ttcattgttttcaaaggaccggcatc 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1142
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1132
Effective search space: 833152
Effective search space used: 833152
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_m19.g1 MSMg01no122_m19.g1 CHROMAT_FILE:
MSMg01no122_m19.g1 PHD_FILE: MSMg01no122_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:40 2005
(751 letters)
>mm_chrX_82257821_82258968
Length = 1148
Score = 1373 bits (710), Expect = 0.0
Identities = 740/752 (98%), Gaps = 5/752 (0%)
Strand = Plus / Plus
Query: 1 gagaagaagaaaagtatctatgtatccttttcctattcaattctcttgcttatgcttctg 60
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 201 gagaagaagaaaagtatctatgtatccttttgctattctcttctcttgcttatgcttctg 260
Query: 61 ttcaaagcatttcacatcatacttactgccttttaattttcatactttcctccttttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaaagcatttcacatcatacttactgccttttaattttcatactttcctccttttctt 320
Query: 121 tccttctcatctaccattttccaaatatctcttcaagaacaagtagatttatcgtggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 321 tccttctcatctaccattttccaaatatctcttcaagaacaagtagatttatcttgtttt 380
Query: 181 gaacctaaacataaattgggaaacagaataattacaagaacagccaaccagagtctggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacctaaacataaattgggaaacagaataattacaagaacagccaaccagagtctggag 440
Query: 241 tgttcaaaataggctagttaccagtctcccaaactaactgactactttatttctgccctt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttcaaaacaggctagttaccagtctcccaaactaactgactactttatttctgccctt 500
Query: 301 gagtgaagggaaaataagaataaaaaggaggtaggtaaagggtaacttttcctttttcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtgaagggaaaataagaataaaaaggaggtaggtaaagggtaacttttcctttttcag 560
Query: 361 acttcctgattacaaatttttctctcttaaaaatatttaattgatatcattgaatgctat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttcctgattacaaatttttctctcttaaaaatatttaattgatatcattgaatgctat 620
Query: 421 atttgaagtctttaattataaatgttattgcatcaggagagattcattgagagcgagaat 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 atttgaagtctttaattataaatgttattgcatcaggagagattcattgagagcaagaat 680
Query: 481 ggggaaggagagggagaatttagtgctaggaattgaaccgaggacctgaatttgctgagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggggaaggagagggagaatttagtgctaggaattgaaccgaggacctgaatttgctgagt 740
Query: 541 tggagataaatgagacagataatagatagacagaccgacagataggcttattcatgtata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggagataaatgagacagataatagatagacagaccgacagataggcttattcatgtata 800
Query: 601 tgttccatgatagctttctgggggaagctagaaaattaacacagaccttcatgtacacta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgttccatgatagctttctgggggaagctagaaaattaacacagaccttcatgtacacta 860
Query: 661 tgcatacattctagcatggaactttactccaggcccatgataatttacaaaaaaaaaaaa 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgcatacattctagcatggaactttactccaggcccatgataatttacaaaaaaaaaaa- 919
Query: 721 aaccactaacat-aaaataatttaccaccaaa 751
||||||||| |||||||||||||||||||
Sbjct: 920 ---cactaacattaaaataatttaccaccaaa 948
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 751
Length of database: 1148
Length adjustment: 10
Effective length of query: 741
Effective length of database: 1138
Effective search space: 843258
Effective search space used: 843258
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
