BAC Information

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BAC

Clone NameMSMg01-123O01
ChromosomeX (Build37)
Map Location 63,190,792 - 63,368,395
singlet/doubletdoublet
Overlap geneLOC671840
Upstream geneLOC100040011, Ctag2
Downstream geneSlitrk2, LOC666824, LOC627734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123O01.T7 (MSMg01no123_o01.b1)MSMg01-123O01.TJ (MSMg01no123_o01.g1)
ACCAG333373AG333374
length1,1981,168
length of high quality
(start - end)
420 (39 - 458)638 (122 - 759)
definitionCHROMAT_FILE: MSMg01no123_o01.b1 PHD_FILE: MSMg01no123_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:12 2005CHROMAT_FILE: MSMg01no123_o01.g1 PHD_FILE: MSMg01no123_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,368,071 - 63,368,395)(63,190,792 - 63,191,429)
sequence
NAAATTTNNNNNNAGTCACTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTTAGGAACAAAACCTTCAAGGAATTAAGTTACTGAAGGC
AGGTTTTTCAGAAACCTCCTTCCATTTCCAGTTCATTATCTACTTTTTTT
TTCTTGTAGCTAAGATGTGATCTCTTAATTTCCTACTCCTGCTGTTTGCC
GTCATGTCCTTCCTCATATTTATCATGATTGATTATTATCCCCTTGAAAT
TATAAGCCTAAATATTTGCTTTCATCTATAAGTTGCTTTCAGCCATGGTA
TTTTATCACAGAATCATAAAAGCAGCCGATATATTATATACATGATATCT
CTACATCATGAATATAAATTAAAGAAGCTGAAACAGAGTTCAAAAGGTCT
CAAAATCATATTAATAAAGAGCCTGTATCCACAAGATAAGAAACCAGAGG
AGTGATGTTTTTTTAACTGCTCTTCTAGTCAGGGCTTGATGTTTCAACTA
AAAAGGAAAGACTAAAATGGGGTCCCAGAGCAAGAAATAGCAGCTTTGGG
TGAACAGGTAGATAGGAAAGCACTTGGGCAGACTGTATTCATTTTGAGCA
ATAAAGCAAAGCTGACATTACTGGGCTAGTTAGGGAGTCCTTTGCTTGTT
GAACCTCAACATATCACTTGTTAGATAATGCTTTGCTTTGGAGCTTTACA
ATCATTGTTTTAGGCGTCTATTACTTTATAAGATCCAGATGAGAGAGCTA
CACTTTTTCCTCAGCGGGGTCTGCCCCATATTTTCCTAGGCCTGCTTTTC
CAGATTAGATTTTAATGCATTTATATGACCCTATATTTAAATGCATTCCA
ATAAAATTTATATTTCTAGAATTCTTTCTCTTTCCAAGAATAAGCCATGT
TATCCATTTTGTGCTGAAAGTGTGGCACCCTGGCCATTCCAACGCCTTTT
TTTGTGTCTCCCCCGCTGGCCTAAAGGCCTTATTTCTTCCAAATTGGCAC
CCCAAACTCTTTTTTAAAAATTGAACTTTCCTTACAATAATGGATTAAAC
CTCGGAAACACTTTTCCATTTTATTTACAATTATTGCGACCTTCCCCTCT
ACGGTGGGCTTCCCTTGTACCCTCCACCCAATGGAACCTCTATGTTTGAA
CCACACTCTATATAACCTCCACTCTCTTTTTAAAGACTTCCTCTTTCT
NTTCTAACATTGGAGNCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTAAAAACTGATTAAAAGGAAAAACAACC
AGATAGAACACCTCTCTGTGAAAAAGGCTGAGCGAGTTCAGAAACAAACC
CCAACCAGGGCACTGTGTGTGTTGCCCTCCATTGAAGTTCTGTACTTGTA
GAAAGTCCTTCCCAACTGCTCCTTCCCCAACCTGCAGAGGATAAGTCAAG
ATTTTCATGAAGTGGATGATTCATCTGTCTTTGTATTGAAGCATTTGCTC
TTTGATGCTATACACAAATGTCTAGGAAATTTGAAAGATGCTGTTCAGTT
CTTCCAGTGAATTGCTAAAGATGAGCCGTGTCGGCAGATGTACTGGCTGA
TTTTATGTGTCAACTTGACAAAGTCTGGGGTTATCACAGGAAAGGAGCTT
CAGTTGGGGAAGTGCCTCCATGAGATCCAGCTGTGGTGTATTTTCTCAAT
TAGTGGTCAAGAGGGAAAGGCCCCTTGTGGGTGATACCATCTCTGGTACC
CAGTCTTGGGTTCTATAAAAAAGCAGGCTAATCAAGCCAGGGGAAGCAAG
CCAGTAAGAACATCCCTCCATGGCTTCTGCATGAGCTCCTGCTTCCTGAC
CTGTTTGAATTACAGTCCTGACTTCCTTTGGTGATCAACAGCAATGTGGA
AGAGTAAGCTGAATAAGCCCTTTCCTCCCCAAGTGTTTCTGGTCATGATG
TTTGTGCAGGAATAGAAACCCCCACTAAGACAGCAGAATAACTCGTATGT
CCAGCCATATGCATACTACGAGCTTAGCTGCCTCCTACTACATAGAGCAG
AGACTGTAGGAAGAGGCAGAACTCTATTTCCTTCAGCAAAGGAGGATTTT
TCTGACTATGACTTTGAAAACATATTGCATGTTAGCATCCCTGCTTGCTC
TGGCCTCCTTCAGGGAACTTGTCCTTCCGTGATAAACTCCCAAAAGGCCC
CTTCTTTTCCCTTCACCCCAAGATCCCCCCTTTTGAAATCTGAGGTAAAA
AATCTCTCCTGGAAAAACACTTTTTTCCTTTTGGAAAACCCCCTGGTGCC
CAGGGAAGGGGTTTTCCTGGGGGGCCCCCTAACATTTCTAAAAAATTTCC
CTCTTTTTAAACGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_o01.b1 MSMg01no123_o01.b1 CHROMAT_FILE:
MSMg01no123_o01.b1 PHD_FILE: MSMg01no123_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:12 2005
         (420 letters)



>mm_chrX_63367576_63368395
          Length = 820

 Score =  613 bits (317), Expect = e-180
 Identities = 323/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 95  tcattatctactttttttttcttgtagctaagatgtgatctcttaatttcctactcctgc 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tcattatctactttttttttcttgtagctaagatgtgatctcttaatttcctactcctgc 761

                                                                       
Query: 155 tgtttgccgtcatgtccttcctcatatttatcatgattgattattatccccttgaaatta 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 tgtttgccgtcatgtccttcctcatatttatcatgattgattattatccccttgaaatta 701

                                                                       
Query: 215 taagcctaaatatttgctttcatctataagttgctttcagccatggtattttatcacaga 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 taagcctaaatatttgctttcatctataagttgctttcagccatggtattttatcacaga 641

                                                                       
Query: 275 atcataaaagcagccgatatattatatacatgatatctctacatcatgaatataaattaa 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 atcataaaagcagccgatatattatatacatgatatctctacatcatgaatataaattaa 581

                                                                       
Query: 335 agaagctgaaacagagttcaaaaggtctcaaaatcatattaataaagagcctgtatccac 394
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 580 agaagctgaaacagagttcaaaaggtctcaaaatcagactaataaagagcctgtatccac 521

                                    
Query: 395 aagataagaaaccagaggagtgatg 419
           |||||||||||||||||||||||||
Sbjct: 520 aagataagaaaccagaggagtgatg 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no123_o01.g1 MSMg01no123_o01.g1 CHROMAT_FILE:
MSMg01no123_o01.g1 PHD_FILE: MSMg01no123_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:12 2005
         (638 letters)



>mm_chrX_63190592_63191629
          Length = 1038

 Score = 1203 bits (622), Expect = 0.0
 Identities = 634/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaggctgagcgagttcagaaacaaaccccaaccagggcactgtgtgtgttgccctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaggctgagcgagttcagaaacaaaccccaaccagggcactgtgtgtgttgccctcca 260

                                                                       
Query: 61  ttgaagttctgtacttgtagaaagtccttcccaactgctccttccccaacctgcagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagttctgtacttgtagaaagtccttcccaactgctccttccccaacctgcagagga 320

                                                                       
Query: 121 taagtcaagattttcatgaagtggatgattcatctgtctttgtattgaagcatttgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtcaagattttcatgaagtggatgattcatctgtctttgtattgaagcatttgctct 380

                                                                       
Query: 181 ttgatgctatacacaaatgtctaggaaatttgaaagatgctgttcagttcttccagtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatgctatacacaaatgtctaggaaatttgaaagatgctgttcagttcttccagtgaa 440

                                                                       
Query: 241 ttgctaaagatgagccgtgtcggcagatgtactggctgattttatgtgtcaacttgacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctaaagatgagccgtgtcggcagatgtactggctgattttatgtgtcaacttgacaa 500

                                                                       
Query: 301 agtctggggttatcacaggaaaggagcttcagttggggaagtgcctccatgagatccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtctggggttatcacaggaaaggagcttcagttggggaagtgcctccatgagatccagc 560

                                                                       
Query: 361 tgtggtgtattttctcaattagtggtcaagagggaaaggccccttgtgggtgataccatc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tgtggtgtattttctcaattagtggtcaagagggaaaggccccttgtgggtggtaccatc 620

                                                                       
Query: 421 tctggtacccagtcttgggttctataaaaaagcaggctaatcaagccaggggaagcaagc 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 tctggtacccagtcttgggttctataaaaaagcaggctaagcaagccaggggaagcaagc 680

                                                                       
Query: 481 cagtaagaacatccctccatggcttctgcatgagctcctgcttcctgacctgtttgaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtaagaacatccctccatggcttctgcatgagctcctgcttcctgacctgtttgaatt 740

                                                                       
Query: 541 acagtcctgacttcctttggtgatcaacagcaatgtggaagagtaagctgaataagccct 600
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccagtcctgacttccttcggtgatcaacagcaatgtggaagagtaagctgaataagccct 800

                                                 
Query: 601 ttcctccccaagtgtttctggtcatgatgtttgtgcag 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcctccccaagtgtttctggtcatgatgtttgtgcag 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)