BAC Information

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BAC

Clone NameMSMg01-124B24
ChromosomeX (Build37)
Map Location 62,333,086 - 62,333,484
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627470, 3830417A13Rik, Slitrk4, LOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124B24.T7 (MSMg01no124_b24.b1)MSMg01-124B24.TJ (MSMg01no124_b24.g1)
ACCAG333559AG333560
length1,2421,274
length of high quality
(start - end)
419 (39 - 457)59 (129 - 187)
definitionCHROMAT_FILE: MSMg01no124_b24.b1 PHD_FILE: MSMg01no124_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:47 2005CHROMAT_FILE: MSMg01no124_b24.g1 PHD_FILE: MSMg01no124_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTATTNNNNGAATCACTGGGCGCTATAGACTACTATAGGGAGAGGATC
CGCGGAATTCTGTTCATTATTTCCTGCATAACCTTTATATAAAAATAAAT
TCTTTTCTGTTTGAAACCTTAAAATTTGATTCAATATGTAAAACCTGGAG
TGTTTTCTGTTTCAATATTTTTCCTTAAAATTCAGTGTTTAAAACTCATT
CCAATGAAAATTTTAGATAAAATATTGATTTGGAATATTAAATTTGATTA
ATAGAATATAATGCAAATTAATATTTCCTATAAAATGGATTACTGGAAGA
ATCTTTCTGTTCATTAGTATTGTTCTTCTTGATGTCAAAAACCCTTACTA
AGTAGCTCACGAAATCCTCAAATCTGCTACATAGTTTAGACTGGCTTCAT
TTTTATTTAATATTCCTGACCCTACATGTAACTCCTGAGTGTTGGCATTG
CCATATTTTTTTTCCCCCCCCTTAAAGCATCATTGTTAATAACAATAATG
TGTTTTGCCATTTTTAAACAATTTCTCCTCTCTGCTAACAAAGAGGAAAT
CAGAAGTATCAAACTGTTTCTAATAGGCTAAAAAGGGTGTGTTAGTAATC
AATCTAACTAGCACAGGACAATAAGTCTCTAAAAGTCTTCTGTCTTCCAT
TGCTAGAAAAGAACACAAAAGGGTAACATGCAAACTTGGAGGCACCCAAT
TAGGCCCCAGTGAACTTTACAGTTTACTTAAACTTCTTAGTATTTTGCTT
TTTTGACATTTAAATTTAAAATAACTACGCTAGTATTTGAAACCAGTTAA
TCTTCTGAAATAATGATTTACCCTTCAAATCACTTTGTAAAATTACAGTA
CTTTGATTGCGAAAATCAAGAATCCATTGAACATATCAAATTTTCCTTAC
ATTGACATATTTATTATACCCTATGTATCACCTCCATTTGTTCCCCGTGC
TCTCAAACTCAATCCTCCCTATTCTGATTCTTGCCTAATTAACAGCTTTT
TACTTCAAAAAGGAACCATGAAATAACCTTTTCTCTAAATTTTATTTCTA
ATAAATTTATGTCCATTAACCTGCCCAAATTTATCTTCTTTTCGAATCAT
TTTTCTTTTTCTCTCTTAAAAAATTCCACTTTCTCTCTAATTCTCAATTA
ATTTCCCCTTCCACACACTTTCTTTCTATTTTCCCCATACATTTTTTATA
ACCTCTTCAATATTTCTTTTCTACTCCTCCCTTTCAAAACAA
CTTCTCCCTTACCGATGTGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCTTTAGAGGCAGTTTTACTAAGCAGAG
CAATCTATTTAGACCCTTAGGAACCGCGTACTCCTGAAAGGCAGGCTGAG
GCTGAAAGAGAATAGAGAAAAGACAAGGCCAAGACAACCCTCTGATCACC
GCCCCAAAGTATACTAATAATCTGTGCTTATATAAACGGAAAGCCCATCT
CCCGCAGATCCATTCTTGATGCCTGTCTATAGCCTGTAGGTGATCTATCT
GAAAGAACTGTTTTGGCAAGTAGGTGTTAATTACTGGGTTGCTTGGTCTC
CCTGATATCTCAAGGGACTCTCAGCAGGTAGCAGTGTCTTGGAGAAGAGC
AGCTTTTGATAACAGAACAATAGAGCCCTCTAGGTCCCGGTCTGAAAGCT
TTACTTTTTTTTGCCCCCCCTCTCAGTGGCCGCCAGGCCCCAAAAAGAAG
AGGGAAGCCTGGCGGAGGCTACCAGGAGAAGCTAGTTTGAATCCGTTAGC
TTGGAAAGAATTTTCACCCAGAGCAGCTGACTCGAACCAGCCATCAGAGA
TCAGGACAAGGTCACCGGATGATCTTATTCATCATTTACCTTTCGAGATG
CCAATTACATCTGCAGAATAAAAGTTCCTTTTACCAAATCTAACATTAAG
ACCACATTGACTTAATGCTCCATTTTCCTCTATTTTTGCTTAGCTGAATT
ACGCGCCCCGCAAACGCTCCTTGACCTTTTTTATCTTTCCCGGCTCCCAC
TTTCCCATGTCCTCAGGTTTATTACTACAACCCCTACCCTTCTCTCCGTT
GTCTCCCTCGGGCCTGCGCCATTGCCCTCCCACACCCGCTTGTCGCCTCC
GCCCGGCTCTCAATTCCCTCCCCAATCTACATCTACTCTTGGCCCCGCCC
CCTACTCTCAAAAACAAGCTTCTTTTTGTTCCCCCCTCCCCCTTCTTCCT
CCCCCAAAATCTTCCACTCTCTCCCCCCGCAACTCTGGGCCGACCACCAC
TTTCTAAACACACCTTCTCTTCTCCCGGCCTAAACAATCCCCCCTAACCT
TTTTCCTTTCCACTCCTCACCCCCATGCGTCCCCTCTTTTATTCAAACAC
CTATCCTCCCTCTACCTCCTTTACGCGCACCACATATACTCCTCCTGCAC
TTTTTTTTCCTTCTTACGCTCTCTTTGGCTATCACCTCTTTCTTCCTCTA
CCACGTCTTTACGCGCCCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_b24.b1 MSMg01no124_b24.b1 CHROMAT_FILE:
MSMg01no124_b24.b1 PHD_FILE: MSMg01no124_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:47 2005
         (419 letters)



>mm_chrX_62332870_62333688
          Length = 819

 Score =  681 bits (352), Expect = 0.0
 Identities = 388/402 (96%), Gaps = 6/402 (1%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctgttcattatttcctgcataacctttatataaaaataaattcttttctgtttga 76
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 615 gaattctgttcattatttcctggagaacctttatataaaaataaattcttttctgtttga 556

                                                                       
Query: 77  aa--ccttaaa-atttgattcaatatgtaaaacctggagtgttttctgtttcaatatttt 133
           ||     |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaag---taaagatttgattcaatatgtaaaacctggagtgttttctgtttcaatatttt 499

                                                                       
Query: 134 tccttaaaattcagtgtttaaaactcattccaatgaaaattttagataaaatattgattt 193
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 498 tccttaaaattcagtgtttaaaactcattccaatgaaaattttagataaaatgttaattt 439

                                                                       
Query: 194 ggaatattaaatttgattaatagaatataatgcaaattaatatttcctataaaatggatt 253
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 438 ggaatattaaatttgattaatagaatataatgcaaagtaatatttcctataaaatggatt 379

                                                                       
Query: 254 actggaagaatctttctgttcattagtattgttcttcttgatgtcaaaaacccttactaa 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 actggaagaatctttctgttcattagtattgttcttcttgatgtcaaaaacccttactaa 319

                                                                       
Query: 314 gtagctcacgaaatcctcaaatctgctacatagtttagactggcttcatttttatttaat 373
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 318 gtagctcacgaaatcctcaaatctgctacgtagtttagactggcttcatttttaattaat 259

                                                     
Query: 374 attcctgaccctacatgtaactcctgagtgttggcattgcca 415
           | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aatcctgaccctacatgtaactcctgagtgttggcattgcca 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)