BAC Information

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BAC

Clone NameMSMg01-124G16
ChromosomeX (Build37)
Map Location 61,943,861 - 61,944,267
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
Downstream geneLOC100040011, Ctag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124G16.T7 (MSMg01no124_g16.b1)MSMg01-124G16.TJ (MSMg01no124_g16.g1)
ACCAG333777AG333778
length1,2761,307
length of high quality
(start - end)
423 (29 - 451)385 (68 - 452)
definitionCHROMAT_FILE: MSMg01no124_g16.b1 PHD_FILE: MSMg01no124_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:29 2005CHROMAT_FILE: MSMg01no124_g16.g1 PHD_FILE: MSMg01no124_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
CTCCCTTATCAAGATCCGTGATGTGGTCATTCTTTCATGAAAGGAATATT
TGTGTGCTTTAAATTCTTGAAAATATTATTGCAGAGGCGTTTTACACGCG
TAGACTGCCCTTGAAAAAAATGAAACAAAACAAAATGGAGTACAAATAAG
AAAACAGGGACTCCATAGATAGAATAGTATTGCAAAACAGACTTTGCAAT
AAAATTGGAGGAAACAGAGTGTGCAATCCACAGTGAAAGTTCAAATTGAA
GAAGGCTGTGTTTGCACACATGCTGGTCTCACAATGACAGCACTGAAGAG
GGTTTAATAAGAACTGTATAGGACTATAATTTGGATTCTCACTGCTCGCT
GTTTATTCCTTTCTGTCACCTGCTACTTTTTCTTTTACTTATTTTCCTTT
TTTTTTTTTTCCCCCCCTCCTTTAACTGTCTGATGCCCATAAGAAATGGG
GTTTAGAGTCATATCTCCTTACACTGCTCTGTGAAGAAATGGCTTTATGA
CTGATTGACAAAAGACATTTGAAGTTTTGCAACCACACCATCCAGAGTTT
TCTTTTTCCCTTTGTCTCTAATTTCACTTAACCCCAACCATGCATTATTT
TTCAAATGTAGTGAGGACAGACTTTGTGCTCTGGTAATTAAATCTCTGTA
CCCATGCTTAACAACATCTTTCTTGCAAAAAATTTTGTCTATTTATACAT
TTAAGCAGCCCCCTTCTGCATCACGCAGATTTTTCTTCCCCTAAATCCCT
CCTTAACCCTCTTACCCGAACCCTGAACCCCTCTCCCCCTATCTAAAGTT
TACCATATTATCCTCTCTTTCTTACCCTCCCTCTCCTTTCTCACTTGGTC
GTGGTTTCCATATGCCTTTCTTTACCTTCCTCAAATGCCGTCATCTCTCT
CTTATCTTTCCCCTAATTTGTTTGCCTAACAAAACCCTTCTTCTTCTTCA
CTTTGGTTCTCCTTGTCTTCCTCCCATCTATCATGTTTTCACACACCATA
CTACCACCTTTCTTCCCCGTCAATTTCCATTTCAATAATTCCTTCCATCT
CTCTATTCTAACTTCCCTTCTACTTTTACAACTTTCTCCGCTCTCTCTCT
CTCTTCCCACTCGGTCCTCCTAATATCCTCTCTCTGGCGTCTCCTCTCCT
CCACTCTTTGTGTATACTTCTCCTGTACATCTCTTTATATATCTCTTTCT
ACACTCTCTACTCCTTCAGCTCCTTA
TTTTCCGTGAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTCTCACCTGAGGAATATGAATGGCTGAGAAG
CACCTGAACCCTTGTTCAGCATCCTTAATCATCAGAGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACACCAGTCAGACTGGCTAAGATCAAAA
ATTCAGATGACAGCACATGCTGGTGAGGATGTGGAGAAAGAGGGACACTC
CTCCATTGTTGTTGGGATTGAATGCTTGTACAACCACTCTGGAAATCAGT
CTGGTGGTTCCTCAGAAATTTGGACATAGTACTACAGGAAGAACCTGCAA
TACCTCTCCTGGGCATATGTCCAGAAGATATTCCAAATGGTAAGAAGTAC
ACTTCCTCCACTATGTTCATAGCACCCTTATTTATAACAGCCAGAAGCTG
AATTTTTTTCCCCACGCCCCTCAAGAGAGGAATGGATACAAATAAAGAGG
GACATTTATACAATGGAGTACTACTCAGCTACTAAAAAGAATGAATTTAT
GAAATTCCTAGGCAAATGTATGGACCTGGAAGGCATCATCCTGAGTGAGG
TAACACAATCACAATGGAACTCAAATGACATGTACTCACTGATAAGTGGA
TATTAGCCCAGAAACTTTGTATACCCGAGATATAAGATACAATTCTGCAA
AACACATGAAACTGAAGAAGAAGGAAGACCAATGTGTGGACACTTTGCCC
CTTCTTAGAACTGGGAACCCAACACCCATTGAAGGAGTTACAGAGACCAA
GTTTGGAGCTGACACAAAAGGATGAACCATCTAGAGACTGCCATATCCAG
TGATCCGTCTCATAATCAGCCTCCAAAAGATGACCCCATTGCATAACACT
TATCAAGAAGTTTGCTGCAAGGACCCTGATCTAGCCTGCCTCTTGGGAGA
CTATGGCCAGGGCCTAAACAAACCCGAAGTGGAACGCTTCACAGTCATCT
ATTGGAAGAATCCACAGGGCCCCCCCCTGGTAGGAACTCGCAAAAGGTTT
CTCTAAGTGATTTAAAGAAGATTGGCACTCCCTCTTGGGTACAAACCACT
TTTATGGAACTTATCCCAGATAACCCGGAGACCTCTTTTACCTCAACTTG
GACAATGGGACTCAAAAGAAAGTGCTTATATCTGTTCTCTCCCCCCTTTT
TTAATGCGCCCCTTTGTGAAGTGAGTTAACATTTATATTGGCTCCTCTTA
TCTCGGTGTAATTGTTCCTCATCTCTATAACAGGGCAGAAAGCCGGTGTC
TACAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_g16.b1 MSMg01no124_g16.b1 CHROMAT_FILE:
MSMg01no124_g16.b1 PHD_FILE: MSMg01no124_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:29 2005
         (423 letters)



>mm_chrX_61943646_61944468
          Length = 823

 Score =  702 bits (363), Expect = 0.0
 Identities = 397/411 (96%), Gaps = 8/411 (1%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctctcc-cttatcaagatccgtgatgtggtcattctttcatgaaaggaatatttg 74
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctctccacttatcaagatcagtgatgtggtcattctttcatgaaaggaatatttg 275

                                                                       
Query: 75  tgtgctttaa---attcttgaaaatattattgcagaggcgttttacacgcgtagactgcc 131
           ||||   |||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgtg---taacaaattcttgaaaatattattgcagaggcgttttacacgcgtagactgcc 332

                                                                       
Query: 132 cttgaaaaaaatgaaacaaaacaaaatggagtacaaataagaaaacagggactccataga 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cttgaaaaaaatgaaacaaaacaaaatggagtacaaataagaaaacagggactccataga 392

                                                                       
Query: 192 tagaatagtattgcaaaacagactttgcaataaaattggaggaaacagagtgtgcaatcc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tagaatagtattgcaaaacagactttgcaataaaattggaggaaacagagtgtgcaatcc 452

                                                                       
Query: 252 acagtgaaagttcaaattgaagaaggctgtgtttgcacacatgctggtctcacaatgaca 311
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 453 acagtgaaagttcaaattgaagaaggctgtgtttggacacatgctggtctcacaatgaca 512

                                                                       
Query: 312 gcactgaagagggtttaataagaactgtataggactataatttggattctcactgctcgc 371
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 513 gcactgaagagggtttaataagaactgtataggactaaaatttggattctcactgct-gc 571

                                                              
Query: 372 tgtttattcctttctgtcacctgctactttttcttttacttattttccttt 422
           ||| ||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 572 tgtatattcctttttgtcatctgctactttttcttttacttattttccttt 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)