BAC Information

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BAC

Clone NameMSMg01-124L02
ChromosomeX (Build37)
Map Location 70,808,532 - 70,808,831
singlet/doubletsinglet
Overlap geneAtp2b3
Upstream geneGabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn
Downstream geneLOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124L02.T7 (MSMg01no124_l02.b1)MSMg01-124L02.TJ (MSMg01no124_l02.g1)
ACCAG333981AG333982
length1,2001,243
length of high quality
(start - end)		---275 (128 - 402)
definitionCHROMAT_FILE: MSMg01no124_l02.b1 PHD_FILE: MSMg01no124_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:07 2005CHROMAT_FILE: MSMg01no124_l02.g1 PHD_FILE: MSMg01no124_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCTGGNGGGCATTGGCGCTATAGATATTATGGGAGAGGATCGCGGAAT
TTACTTGGAGTTAGCCTTTAGGTCCGNNNNNGGNNNNNNNNNGGGGAGAN
NCTTTAAAAACCCCNNNNGNNNNNNNNGANNNNGGNNGAGNNNNGNNNNN
NNNNNANNNNANNNNNAGNAGATTTGGGGGAANNNNCNNNANNNNNNNGA
ANAGGANGGGGGGGGGGGAAGGNAAANNGGGNANNNNAGNGGGAGNGAGG
GGAGAAGNNNGGGANNAGAGANGANGGAAGGGAGAGGGNAGNAAGANNNG
GNGNNGGNGAGNNAGGTTTTANNNNAGNNAANNNGANNANGNNAGGGANA
GAAAGGGNGGGNNNAAGGAAGGGGAGGNGGANGGTTTTTTTTTGNGAGAA
GNNNNNNNNAGNGAGGNGGGGAGAAAAAAAAAGGCNNNTTTTTTATAGNG
NGANNAGANGGAAAGANATTTATAAAAAAAAAGGGGGGGNAGNTNTGTTT
TTTTTNNAGNATAANTTATTTNTGGAGTTNNTTNTTTGGNTGATTGATGG
TTTTTTANTNNNGAGTTTNTTGATAGGAAGATAAAAATGAGGGGGGGAAA
NNTTANAAAGTGTAGGGAAGTGAAATTGTGGTTTTGTTATTTAAGGGAAT
AGGATTAAGAATTAGAGTTTGAGTTTGAAATGAAAAGTTTTGGGGAAGAG
GGNTTTTTGAGAAATATTTGAGGAAGGTTATTGGGGAGGAAGAGTAAAGA
GNNGAGGTTTTTTTTTTTTTTTTTGGGAGGAAGAGTGGAGAATGGGGGAA
ATGNGATATGTAATGGAAGTGGGGTGGAAAAAGATTTAGATGGATTTTTT
TATTTTTTTTAAAAAATGGGAATTAGGGATGGTAGAAGGGAAATTTTTTT
TGATTTGAGGTGAGGGGGGGAAATGTGTTGAGTGGGGAGGTAAAAAGGTG
GGTGGGGGGAAAAGAGGTATTTAATGGGTGGGGAATAGGNAGTGATGGAA
GGGGAGTAGGGGTGTTGTAAATTTTGGTGTGGAGTGTTTAATTTTTGGTT
AGGTAGAATGTAGTGATTTGGTAGTGGAATAAGGTGGTTGATGAGGAGTT
GTGTGGGGTAATAGAAGTTTTGGGGGGTAGGTTTGGTGATGGTTGGGATG
ATATGGGTTTATAAGATGTGGTGTGAGTGGGGTATAGTGGGGGGTTGAGT


NGGGGGTTTNNNNNGGAGATGTGAGGCGGTGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCCCTTTCTTAGACACTGGACCCTGC
AGAGACGCTTTGATGGCCCCTTTATCCAGGCTTGTATTTCCAAAGAGATC
GTGCTCCTTTTTTGTTCCCATTAGGAGGGAGATACATAGCGCCCTGGGTT
TGCTGCTTCTTTGCAAAGCTGGATGACTGACAAACCCTCCTCTAGCTACC
CTTTTGAAGTTCTTGACAATCACCAGGAGAATGAAGTGGCTGGGGTGAGA
GGGACATTATGAATACCCACAGGGAATGCAATTTCACAGCCTTATTGTTT
CCTGAGCCATCCATCCTGATTGGCCTTCAGTAAATGGTCCAGGTCACAAG
ATATTTTTTTTTATCCATGAGGGGAAAAACAAATATGTTCTGGACCTAGA
GGACTATTTTTTTTTTCCCCCCCCCCGGGACAGCCTTCTCCCTCAAAAAA
AAAAGGGGGGTTGNTTTTTTTTTTTCCATGATCATTTCAGTCTGTGCACG
GGTCTTGTATGGATGTGGAGAGACCCTTGTGTCTTCATTCAGTATGTCTT
ATATAGAGTTAGATTTTTTTAGCGTGTTTTCGTTATATATTTTTCTTCGT
CCTCTATTCTTTTTATTTATAATTTATATTATCTTTTTCTCTATATCTCT
TTACTCCGTTTCCTCCTCTTCCTTTATCTTTTCTCTTTGTTCCTTGTTTC
TCTATTCTCTCTTTTTTAATTTACTTTTTTCCCTTTTTTCTTCTTATTTC
TTTTTATTTATTATCCTTCTCTTCACTTTTTTTTCTTATTAATTCCTTAT
TTATTCTTCTCTCTTTTCTTTTTCTTCCTTTTTCTATCTCTTACTCTCTT
CCTTTTTTTCCTTTTTTTCTTTTTCTTTTATTTCTTCTTCTTCTCTTCTT
TTCTTCCTTTTTTTTTTATTTTTTCACTAATTTGTCTCCCTTTTATTCTC
TCTTCTCTTTTTTATCACTTTCTTTTTTCTCCTCTCTTTTTTTTTTTCTC
ACTTTCTCAATCTCTCTTAATTTCTCCTCCTCCTTCTTCTCTCCTACTTT
CTCTTACTTACACTTTTTCTTTCTGCCTTTTCTTTTTTACTATTATCTTC
TTCACTCTCTCCTTTGCTTCTGTTACTTCTTCCTCTTGCTTCTCTTTCAT
TTTACTCTGTATTCTCACCTTTCCTCTTTTTATTTATTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_l02.g1 MSMg01no124_l02.g1 CHROMAT_FILE:
MSMg01no124_l02.g1 PHD_FILE: MSMg01no124_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:08 2005
         (275 letters)



>mm_chrX_70808472_70809146
          Length = 675

 Score =  445 bits (230), Expect = e-129
 Identities = 270/300 (90%), Gaps = 26/300 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcttgtatttccaaagagatcgtgctccttttttgttcccattaggagggagatacat 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggcttgtctttccaaagagatcgtgctccttttttgttcccattaggagggagatacat 301

                                                                       
Query: 61  agcgccctgggtttgctgcttctttgcaaagctggatgactgacaaaccctcctctagct 120
           || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 300 agtgccctgggtttgctgcttctttgcaaagctggatgactgacaaacccttctctagct 241

                                                                       
Query: 121 acccttttgaagttcttgacaatcaccaggagaatgaa---------------------- 158
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 240 acccttttgaagttcttgacaatcaccaggagaatgaagtcctacagctttagtgtatga 181

                                                                       
Query: 159 ----gtggctggggtgagagggacattatgaatacccacagggaatgcaatttcacagcc 214
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gtatgtggctggggtgagagggacattatgaatacccacagggaatgcaatttcacagcc 121

                                                                       
Query: 215 ttattgtttcctgagccatccatcctgattggccttcagtaaatggtccaggtcacaaga 274
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 120 ttattgtttcctgagccatccatccagattggccttcagtaaatggtccaggtcacaaga 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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