BAC Information

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BAC

Clone NameMSMg01-124M12
ChromosomeX (Build37)
Map Location 18,851,191 - 18,851,529
singlet/doubletsinglet
Overlap genenone
Upstream geneUtx, LOC100043952, 4930578C19Rik, LOC100043098, EG628855, LOC385333, EG628871
Downstream geneLOC100043953, BC049702, LOC675558, LOC668995, LOC385336, Chst7, Slc9a7, LOC668277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124M12.T7 (MSMg01no124_m12.b1)MSMg01-124M12.TJ (MSMg01no124_m12.g1)
ACCAG334046AG334047
length1,2511,246
length of high quality
(start - end)
427 (31 - 457)338 (121 - 458)
definitionCHROMAT_FILE: MSMg01no124_m12.b1 PHD_FILE: MSMg01no124_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:20 2005CHROMAT_FILE: MSMg01no124_m12.g1 PHD_FILE: MSMg01no124_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCAAAACACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGA
ATTCAACTCTAACAAGAAAAATTACATGAAGCAACAATTACTTTTCCTTA
ATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGATATAGACG
AACAGAGTGGCTACATAAAGAGGATACAACATTTTGCTGCATACAGCAAA
CCCAACTCAGGGACAAAGACAGATACTACCTCAGAGTAAAAGGCTGAAAA
ACAATTTTCCAAGCAAATGGTCCCATGAAAGAAACTAGAATATCCATTCT
AATACCAAATAAAATCAACTTTCAACCTAAAGATATCAGAAAAGATACAG
AGGGACACTGTATACTCATCAAAAGTAAAATCAACCCAGATGAACTCTCA
ATTCTGAACATGTATGCTCCAAATGCAAAGGCAACCACATTCATTAAAGA
AACTTTTTTTTTTTCCCCCCCCCCCCACATTGCACTGCACCCCACACAAG
AAAAGAAACTTCAACACTCAACTCTCATCAATCTCATCAGGATCTGTCCA
GATCCTGGTAATAGACACCAAACAGAGACATGGTGAAATTAAAAGAAGAT
ATGAAATAAATGCTTTTAACAGATGTCTATAGAACATTTTACCCTAAAAC
AAAAGGATATACCTTCTCAGCACATCATGGTACCTTCTCCAAAATTGACC
ATATAATCAGTCACACAACAGGCCTCCACAGATACAAAAATATTGAAATA
ATCCAATGCATCCTATCAGATCACCACGGACTAAAGCTGAAATTCAATAA
CCATATCAATAATAGAGAGCCCCTATAGATGTGGAAGCTGAACAACGCTC
TACTCCATGATAAATTGGTCCCGGAAGAAATAAAGAAATTAAAGACGTTT
TAGCGTTTAATGAAAATAAAAGCCCCAACTTACCCAAACTCATGGGACCC
CATGAAACCCTCCTAAAAAGAAAACTCATAGCCCTGAGTGCCTCCAAAAG
AACCTGCAGAGAGCATACCTAATCGGCTGATAGCCCACCTAAAACTTCTT
GAACAAGGAAAGCCATTTCCCCCCCGAGGAAAAAAGGCCGGAAAAAGTCC
AATTTCAATTTGACACCCCAACGGGAAAAAAAATTCTCTTTCTATAAATC
CCCCCACCCGGAGCTTCTTCTTTGAAAAACCACCAAGGAGACAAACCCCT
TCCCCGCCAACCTAAGGCGCAAAACCCGTTCCTTCCTTACCAATATAAAA
T
NNTTTTGAACAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCTTATTGGCTCTCAAACAACTGTTTACTAG
TTATATAACCCCTTCTTACGAAGGAACATTTTAATTCAAACAGAACAGAT
ACATAACACCTGGTCTATGGATCGGGATTCCAAATGGGAAATAACACAAA
GAAAGGGCAACAATCTCCAACTTAAACAGTTTGTGAACTTTTGGACACAG
TTATTCCTGCTTCTGTTGGTTCCAGGAAAGTCCTCATGATACTGCGGGGG
TGGCGGGGATAGTGGATACCTTGAATGCATTAGAAATTGATCAGTTCTTC
TTTATGGATATTCTATTCTCATGATTAAATCTCATTCTTGTACCAATGAA
ATTTCACATCACTTAAAGAAACCCTTTTTATGTCCAAAAATCCATAGTTC
TTAGTCATTTATCCTAAAGTTAAAAGTATTTATTTTTTCTTCCCTCACTC
TTGCTCATTTTCTGAGGTTAAAAGGCAATCGTAAATTTGGTATGATAAAT
TTTCCTTTCATTCTCCTCCTATCTTTCAATATGCCAATCAAGCTGTCAGC
TTGCTTTCTCTGCAGATTCGTAACACTCCACCTTCAGTCTCATTAACCGA
TTTGGCTTTTGTTGCACATGAAGAAAACGCATCCCCATACTTAAAACCCT
GGGAGTTACAGTTTAGAATTTCTTCAATTGTCTTTGGAGTGTTGTCTCCT
TCTGTTTATTCTTTATTTTCAGTATTTCAGGGGGAAATATCCTTTTCCTT
TTAACCATCTTTCATTGACCCAATCTTCCAAAATGAAGTATGATTTATAC
TCATAACTTATAGATGGGTCTACTTTCACAAATTTCAAACTACAGTCAAA
CTTTACTCACTTATTTGAACTCTGGATTTTGTGAAGCTTAGTACTACTCC
GCTATTAAAAAGAATGAATTATGAAATTCCTAGCCAATGTATGGACCTGG
AGGGCATCTTCCTGAGTGAAGTTACCCATTCCCAAAGGAACTCCCACACT
ATGTACCCCCCGGAAAGGGGATATTAACCCCAAACCCTGGATAGTCCAAA
AATATAAATAAAATTTCCTAACATTCTAAACCCTCAAAAATGAAAATGGT
ACCCCCTTATTAAATTCCCCCCCTATAAAGGGGGAAAAAAAACCCCCTGA
GGGAGTTTCCAAAACACAATTTGTGGTCTGAACAATATGAGTGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_m12.g1 MSMg01no124_m12.g1 CHROMAT_FILE:
MSMg01no124_m12.g1 PHD_FILE: MSMg01no124_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:20 2005
         (338 letters)



>mm_chrX_18850991_18851729
          Length = 739

 Score =  625 bits (323), Expect = 0.0
 Identities = 335/339 (98%), Gaps = 1/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaacattttaattcaaacagaacagatacataacacctggtctatggatcgggattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaacattttaattcaaacagaacagatacataacacctggtctatggatcgggattc 260

                                                                       
Query: 61  caaatgggaaataacacaaagaaagggcaacaatctccaacttaaacagtttgtgaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatgggaaataacacaaagaaagggcaacaatctccaacttaaacagtttgtgaactt 320

                                                                       
Query: 121 ttggacacagttattcctgcttctgttggttccaggaaagtcctcatgatactgcggggg 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ttggacacagttattcctgcttctgttggttccagaaaagtcctcatgatactgcggggg 380

                                                                       
Query: 181 tggcgggg-atagtggataccttgaatgcattagaaattgatcagttcttctttatggat 239
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggggggggatagtggataccttgaatgcattagaaattgatcagttcttctttatggat 440

                                                                       
Query: 240 attctattctcatgattaaatctcattcttgtaccaatgaaatttcacatcacttaaaga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attctattctcatgattaaatctcattcttgtaccaatgaaatttcacatcacttaaaga 500

                                                  
Query: 300 aaccctttttatgtccaaaaatccatagttcttagtcat 338
           |||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 aaccctttttatgtccaaaagtccatagttcttagtcat 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 739
Length adjustment: 9
Effective length of query: 329
Effective length of database: 730
Effective search space:   240170
Effective search space used:   240170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)