BAC Information

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BAC

Clone NameMSMg01-125N07
ChromosomeX (Build37)
Map Location 48,524,108 - 48,524,546
singlet/doubletsinglet
Overlap geneMbnl3
Upstream geneEG665816, Olfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355
Downstream geneLOC665866, LOC385356, Hs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125N07.T7 (MSMg01no125_n07.b1)MSMg01-125N07.TJ (MSMg01no125_n07.g1)
ACCAG334815AG334816
length714705
length of high quality
(start - end)
439 (74 - 512)371 (65 - 435)
definitionCHROMAT_FILE: MSMg01no125_n07.b1 PHD_FILE: MSMg01no125_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:59 2005CHROMAT_FILE: MSMg01no125_n07.g1 PHD_FILE: MSMg01no125_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGAGC
CGCGGAATTCTGTGGAATTGCCTATACAAGAGAGCTGACCCTTGTGTCTG
AAGTTAGTACTTCAAGAGGCTTCATATCACACACCTGATGAGAAGACATG
CCTACAAATCAGTCGTTTAGGATTCATGTTGAGGGCAATAATGGCTGCTG
CAGGAAAGCATGGAGCGTGAAGCACAGGAAGCACACATTGAACACATTAT
TAAGTTCTCTATCTCGCTGTCTTCATCCAAGCTTAGGGCTGTCTTCCTCC
CAAGGCTCCGAAAATAGGAAATTGATATGTTCTTCCTACCCCAGAGTGAT
TTATACTAGATTGGCAAAACCAATTCTTCATCGAAAATTTCTTTATGGAG
AAATTTAGAACTTTAAATATTCTGACTTTTAACCGCTTTAATTAAATGTT
ACATAATTAGTCACGGAACTTGCGAATGCTAAACAAAGCTGCATGACTAT
AATACACTCAGAAGAAAATCGGTCAGCCTAGATAGGCCAAGTTGCTGTCT
AACTCCCAAGGTCGATCGGAACAAGCCCCAAGGGAAGATTTAAAGACCTC
CACAGCACTGGAAAGCTAATAAGTAACTTAGGGCTCAAGATTTGATCTTT
ATTATGGGGGCGGGGGTGTGCATGTTAATGCAGTGTCCTCATAAGCCCTA
TGACGGAGTCTGAT
CCGATGATGTGCGAGGCTGGCGGCCGCTGGTTCAAAATTGAGGTGAACTA
TAGAAGTTCCGCGAAATTCATTTTGTGTTGGCCATCATTTCTGGGGCATG
TGGCTGACACTCCATTGCGAAAAATGTGATTTTCCTTTGATAGTAGGTAT
TAATCGCAAATAGCTTCTTGGTTTCAGATGGGACTCTGTGTCGACTTCCA
TCTTTCAGTGCTGGGATGCAGTCTGGCTTGAAGCTGTATAGGTCTTGTTT
AGGCTAACAAACTCTTTGTGAATTAGTTTGTGTATCAGTCCTGTAGTGTC
CGGAAGACACAGTTTCCTTGTAGTTATTCATAGTCTCTGACTTTATAATC
TCTTCATTTCCTCTTCTGCATAGATTCCTTATCTGTGAGGGTAGGGGCTT
AATGAAGACATCCAACTTGGGACAGAGCATATGAGACTTATTCATTCTCT
GCACCCAGATGTGGATCTCTGTGATAATTGCCATCTATTTCAGGGTTTTT
CTGACGGAGGTTAAACAAGGTTCTGAGTTATGGCTGTCATTAGGGGACAT
TTCATTGCTATGTCTTTTTCACAGATAATGGTTCTAGGTTTTCCCCATGG
GTCTCAAGACCTACCTAGCCTCATGTTATTGGGCACTTTAAAAATTTTAT
GCCTGAATCTCATTCTTATGTAATGGGTCCTTAAACCAGTATATAAGTGG
TTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_n07.b1 MSMg01no125_n07.b1 CHROMAT_FILE:
MSMg01no125_n07.b1 PHD_FILE: MSMg01no125_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:59 2005
         (439 letters)



>mm_chrX_48523908_48524746
          Length = 839

 Score =  803 bits (415), Expect = 0.0
 Identities = 433/439 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacaagagagctgacccttgtgtctgaagttagtacttcaagaggcttcatatcacaca 60
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 atacaagagagctgaaccttgtgtctgaagttactacttcaagaggcttcatatcacaca 260

                                                                       
Query: 61  cctgatgagaagacatgcctacaaatcagtcgtttaggattcatgttgagggcaataatg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgatgagaagacgtgcctacaaatcagtcgtttaggattcatgttgagggcaataatg 320

                                                                       
Query: 121 gctgctgcaggaaagcatggagcgtgaagcacaggaagcacacattgaacacattattaa 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgctgcaggaaagcatggcgcgtgaagcacaggaagcacacattgaacacattattaa 380

                                                                       
Query: 181 gttctctatctcgctgtcttcatccaagcttagggctgtcttcctcccaaggctccgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttctctatctcgctgtcttcatccaagcttagggctgtcttcctcccaaggctccgaaa 440

                                                                       
Query: 241 ataggaaattgatatgttcttcctaccccagagtgatttatactagattggcaaaaccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataggaaattgatatgttcttcctaccccagagtgatttatactagattggcaaaaccaa 500

                                                                       
Query: 301 ttcttcatcgaaaatttctttatggagaaatttagaactttaaatattctgacttttaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 ttcttcatcgaaaatttctttatggagaaatttagaactttaaatattctgacttttaaa 560

                                                                       
Query: 361 cgctttaattaaatgttacataattagtcacggaacttgcgaatgctaaacaaagctgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgctttaattaaatgttacataattagtcacggaacttgcgaatgctaaacaaagctgca 620

                              
Query: 421 tgactataatacactcaga 439
           |||||| ||||||||||||
Sbjct: 621 tgactacaatacactcaga 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)