BAC Information

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BAC

Clone NameMSMg01-126M19
ChromosomeX (Build37)
Map Location 76,014,299 - 76,014,769
singlet/doubletsinglet
Overlap genenone
Upstream genePrkx, Pbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1, LOC667679, LOC667684, 4921509A18Rik
Downstream geneLOC667700, EG546337, EG629116, LOC636082, EG667736, LOC100041373, EG636104, 2410003J06Rik, LOC667749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126M19.T7 (MSMg01no126_m19.b1)MSMg01-126M19.TJ (MSMg01no126_m19.g1)
ACCAG335517AG335518
length705709
length of high quality
(start - end)
307 (62 - 368)471 (69 - 539)
definitionCHROMAT_FILE: MSMg01no126_m19.b1 PHD_FILE: MSMg01no126_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:19 2005CHROMAT_FILE: MSMg01no126_m19.g1 PHD_FILE: MSMg01no126_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGAGCGCGGAATTC
GCATATAGCACACTATTGGCTTATTCAACATTAAGAGAAATATTACATGT
CAGCAAAAGGGCATCAGGACTTTGTTCCTGTGGGCTGGGGGCTTATCTTT
GTTCACATAGCAGCCAGTTGATGTATGACTTTACCCGGCGTCATGGGGCA
GTAGACAGAGGGAAGGTTCCGGCCAGGTTGTGTTGACCCAGACAAGATAG
CCCTGCTTGTCTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTCATTTTTA
CAGTCAAGCTGTTCTTATGAATGTCAACAACCGCCCTGCCTGTTCTGCTT
TGTTCTCGGCCCCAGGCAGCCTCTAGGTTCACAATCAACCAGTAATTTCT
GAGTATTCCACATGACTTACAGGCCTTGAAATTTCATCTTTCTTTCTTGG
CAGGATGTGGCAGTTTTGACTGCACTTACCCTATGCCTTCAGGACCTCAC
TCAGTGGGTGTGGGAGTACAGCCTGAGGCTGCTCGGGGCACTGCTGGACC
TGTTTCAGGGGGCACCCAGTCCCGATAGGATACCTTTACCATTATATTCT
CAAATTCTTGGGCATGCACACCCCCCTGTCACTTTTNTTAAACTTTGACA
AATTATTACTCCCCTGTAGGCTGTATTTACTCTGCTCCCTTACCCGTATA
TTATG
GATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACCCTCTGGAATAGTTAACAGGGTTGTTTTG
ATTTGCATTTCCCTGATGACTAAGGATGTTGAACATTTCTTTAGGTGCTT
CTTGGATATTCGATATTCCTCAGCTGAAAATTCTTTGTTTAGCACTTTAC
CCCATTTTTAAATAGGGATATTTGATTCTCAGGAGTCTAACTTCTTGAGT
TCATTGTCTATACTGGATATTAGCCCTCTATCTGATGTAGGATTGGTAAG
GATCTTTTCCCAATTTGTTGGTTGCTATTTTGTCCTATTAACAGTGTCCT
TTACCTTACAGAAGCTTTGCAATATTATGAGGTCCTATGTGTTGATTCTT
AATCTTACAGCATAAGCCATTGGTGTTCTGTGAACCCTAATTTTAAAGTA
TTCATTAACTGTTTTTATTGTGTAGGTTAAGGAGAGGTATCCTATTTCCC
TTTACTTTAAAAGCTGGCTCTACTAGTTCTGACTAAAGTGTTGCCTCTGA
CAAGTAGCATTCAGGAAATTGTAATTTATAGCAATAGTTTTATTGGAGTG
TTGCCAATAATCTACCAGGATACATGAAGTCTGTCAACATAAGTTGAATT
CCTTAGCGTTCTATCTATATTCTATGTGTTTACAGCCAAGAATCCTGTGC
TACTGTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_m19.g1 MSMg01no126_m19.g1 CHROMAT_FILE:
MSMg01no126_m19.g1 PHD_FILE: MSMg01no126_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:19 2005
         (471 letters)



>mm_chrX_76014099_76014969
          Length = 871

 Score =  888 bits (459), Expect = 0.0
 Identities = 468/471 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccctctggaatagttaacagggttgttttgatttgcatttccctgatgactaaggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccctctggaatagttaacagggttgttttgatttgcatttccctgatgactaaggatg 260

                                                                       
Query: 61  ttgaacatttctttaggtgcttcttggatattcgatattcctcagctgaaaattctttgt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ttgaacatttctttaggtgcttcttggatattcgatattcctctgctgaaaattctttgt 320

                                                                       
Query: 121 ttagcactttaccccatttttaaatagggatatttgattctcaggagtctaacttcttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcactttaccccatttttaaatagggatatttgattctcaggagtctaacttcttga 380

                                                                       
Query: 181 gttcattgtctatactggatattagccctctatctgatgtaggattggtaaggatctttt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttctttgtctatactggatattagccctctatctgatgtaggattggtaaggatctttt 440

                                                                       
Query: 241 cccaatttgttggttgctattttgtcctattaacagtgtcctttaccttacagaagcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaatttgttggttgctattttgtcctattaacagtgtcctttaccttacagaagcttt 500

                                                                       
Query: 301 gcaatattatgaggtcctatgtgttgattcttaatcttacagcataagccattggtgttc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 gcaatattatgaggtcctatgtgttgattcttaatcttaaagcataagccattggtgttc 560

                                                                       
Query: 361 tgtgaaccctaattttaaagtattcattaactgtttttattgtgtaggttaaggagaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgaaccctaattttaaagtattcattaactgtttttattgtgtaggttaaggagaggt 620

                                                              
Query: 421 atcctatttccctttactttaaaagctggctctactagttctgactaaagt 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcctatttccctttactttaaaagctggctctactagttctgactaaagt 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)