BAC Information

Click to search

BAC

Clone NameMSMg01-128A03
ChromosomeX (Build37)
Map Location 56,789,679 - 56,790,190
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC631581, LOC631621, 4930550L24Rik, Fgf13
Downstream geneF9, EG434782, Mcf2, Atp11c, LOC666517, LOC631784, LOC100039611, LOC100039621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128A03.T7 (MSMg01no128_a03.b1)MSMg01-128A03.TJ (MSMg01no128_a03.g1)
ACCAG336391AG336392
length718718
length of high quality
(start - end)
558 (46 - 603)513 (74 - 586)
definitionCHROMAT_FILE: MSMg01no128_a03.b1 PHD_FILE: MSMg01no128_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:57 2005CHROMAT_FILE: MSMg01no128_a03.g1 PHD_FILE: MSMg01no128_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTACCATACCGAATGGCAGAAAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGAA
ATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
AGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGGGCAT
TTATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCAATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAATGAGGTAACACATTCACAAAGA
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATATATTTTGCTAAACACATGATATTCCAGAA
GAATTAAGACTGAAGTGA
CAATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCTGAGGAATGGATCCTGGGTGTAG
TTCGGTAGATAAAACACATATTCAACATGTTCAAGCCATCAGGTCTGATT
CCCAGAACCCTGAAGAGATGAGCACAAAAGCGAGGTCATTACAATAATAA
CCAATTAAAAACAATGACCACCATAATAACATTAGAGGGGAAAATGCTCA
AAGAGGGTACTGCTTGAATTCAGAAGATAATATTTAATAAGTATACAAAT
AAGAAAATAAGAAACACAATACTAAGAAAAAGTACCAGATAAAAGAGAAA
AAACAGAAAGAAAAATGAAAACGAGGGAATAATTAGAGTAGATGAGAGAG
AGAAATCTAGCTAAGATTGTGATCAAAAGGAAAAAATATAAATAAACAAG
CAACATTACATTAACAACAAGTAAAATAGAGAAAAAATTAATCTTATGGC
AGATGCCTATCATCTTAGCATTCTGGCAACTGAGTCTGGACAGCTACAAT
CCGAGGCCAGCCTGGTTTCAATACCAAGAGCCTGTTTTGGAGAAAAAAAG
AGGACAAGACAAATGTAGTTAAAGACATTAGATATTAAAGCTAAAGAAGA
GAAAAGAATATGATTAGAGACAGAAAAGATGCTACATAGAAAAGAAATAA
AATTTCTATCTACATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_a03.g1 MSMg01no128_a03.g1 CHROMAT_FILE:
MSMg01no128_a03.g1 PHD_FILE: MSMg01no128_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:57 2005
         (513 letters)



>mm_chrX_56789569_56790480
          Length = 912

 Score =  953 bits (493), Expect = 0.0
 Identities = 508/513 (99%), Gaps = 1/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgaggaatggatcctgggtgtagttcggtagataaaacacatattcaacatgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attctgaggaatggatcctgggtgtagttcggtagataaaacacatattcaacatgttca 563

                                                                       
Query: 61  agccatcaggtctgattcccagaaccctgaagagatgagcacaaaagcgaggtcattaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agccatcaggtctgattcccagaaccctgaagagatgagcacaaaagcgaggtcattaca 503

                                                                       
Query: 121 ataataaccaattaaaaacaatgaccaccataataacattagaggggaaaatgctcaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 502 ataataaccaattaaaaacaatgaccaccataataacattagaggggaagatgctcaaag 443

                                                                       
Query: 181 agggtactgcttgaattcagaagataatatttaataagtatacaaataagaaaataagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 agggtactgcttgaattcagaagataatatttaataagtatacaaataaaaaaataagaa 383

                                                                       
Query: 241 acacaatactaagaaaaagtaccagataaaagagaaaaaacagaaagaaaaatgaaaacg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acacaatactaaggaaaagtaccagataaaagagaaaaaacagaaagaaaaatgaaaacg 323

                                                                       
Query: 301 agggaataattagagtagatgagagagagaaatctagctaagattgtgatcaaaaggaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 322 agggaataattagagtagatgagagagagaaatctagctaagattgtgatcaaaagg-aa 264

                                                                       
Query: 361 aaatataaataaacaagcaacattacattaacaacaagtaaaatagagaaaaaattaatc 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 263 aaatataaataaacaagcaacattacagtaacaacaagtaaaatagagaaaaaattaatc 204

                                                                       
Query: 421 ttatggcagatgcctatcatcttagcattctggcaactgagtctggacagctacaatccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttatggcagatgcctatcatcttagcattctggcaactgagtctggacagctacaatccg 144

                                            
Query: 481 aggccagcctggtttcaataccaagagcctgtt 513
           |||||||||||||||||||||||||||||||||
Sbjct: 143 aggccagcctggtttcaataccaagagcctgtt 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space:   453706
Effective search space used:   453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)