BAC Information

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BAC

Clone NameMSMg01-129B05
ChromosomeX (Build37)
Map Location 140,102,988 - 140,216,608
singlet/doubletdoublet
Overlap genePak3
Upstream geneTmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
Downstream geneCapn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129B05.T7 (MSMg01no129_b05.b1)MSMg01-129B05.TJ (MSMg01no129_b05.g1)
ACCAG337177AG337178
length688698
length of high quality
(start - end)
243 (75 - 317)184 (124 - 307)
definitionCHROMAT_FILE: MSMg01no129_b05.b1 PHD_FILE: MSMg01no129_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:22 2005CHROMAT_FILE: MSMg01no129_b05.g1 PHD_FILE: MSMg01no129_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,216,366 - 140,216,608)(140,102,988 - 140,103,171)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCGGAGCGGAGCCGCGG
AATTCACTCTTGACTCACATAATCAATAAAGTTGCCAGAAAGCTTTTTTT
ACCAATATTTCCCCATTCATCACCATCTCCTAGATGAGCAGTGCTACTGT
TTACCATGTGAGGATGAAATGTTTCCTTCTTTCCATCACCAGAAGCAAAG
AAGAGGAAAAGAAAGGGAAGCGAACACAAGTGGCAAGGCAAAAAGGTCAG
CTCAGTTCTTGGAATAAGGGTTAAATCAATGGTTCTCAACCTGTTGGTGA
CAACCACTATGGGATTGCTTATTTAATTTCCTGCATAACGCTGGGCAGTG
GTGGCGAATGCCATTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATT
TCTGAGTTTGAGGCCAGCCTGGTCCACATAGTGAGTTCCAGGACAGCCAG
GGCTACACAGAGAAATCCTGTCTCAAAAAGAAACCAGATTTCCTGCATAT
TAGATATTTACATTCTAATTCATAACAGTTGCAGAGTCCCCATTATAAAG
TATCAATTCAAATACTTTTATGGCTGGGGGTCACCACAACATGGGGAACT
ATATTAAATGGTCACAGCATTAGGAAAGTTGATAAACACTGGTTAAACCT
CTTTGGTTTCCCCTGCCTTGATGAAAATAACTTGGACT
TATCGATGAAGTGNGTAGGCTGGTGGCCGCCTGTCCGACAAATTTAGGTG
AACTATAGATTTCCCCACGAAATTCTTTGGAATTCTGCACCCTAAGCAGA
CCACTATCTCTGACAGTACCCCATCGCCCCCTAGTGACCGCACTGGAAAC
ATTTTTCTCAGCTCTTGATTGTTATCCCATGATCTCCATCAAGGGTGCCA
GTATTCTTACATTGCTCTCACTCCTGGCAAGCAAAGGCACATTCCTTCTA
TCAAGACTGAAGGAGTAAGTCAGGGATGTGCAGCCTCCTTTAGAGCATTC
TTCTCCAGTGTGAGTGGTTTTAAAGGGAGGGGTACCACTCTCTTCTCCCT
TGTATGTTTTTTTTTCTTCCTCCTCTTCTTTGGGCCTGAAAAAGAAACCA
GGAGCCCAGAAATATTTACTGCTACATAAGACACTTGCCAATGTTTCTGG
CTAACAAAGAGTAATTTTCATAACTGTCTTTGATCTGCATCCCAAGGTGA
AAGTTTTATTCCTCATACTTGAATTCTGGCAAAAATCTAATATTCGGCAA
GTTAAAGAAAACTTACACATGTTTAAGATGTGTCCCTCCCTTATTCCAGT
TTCCCATTATAAATTATGAGTTACACACCTGCAATTTCATTAATTTATAT
TTGAACAGTTATATTGGAACTTTTGTACAACTTACCAATTTATGTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_b05.b1 MSMg01no129_b05.b1 CHROMAT_FILE:
MSMg01no129_b05.b1 PHD_FILE: MSMg01no129_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:22 2005
         (243 letters)



>mm_chrX_140216166_140216808
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaagttgccagaaagctttttttaccaatatttccccattcatcaccatctcctaga 60
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 443 aataaagttgccagaaagcttttttttccaatatttccccattcatcagcatctcctaga 384

                                                                       
Query: 61  tgagcagtgctactgtttaccatgtgaggatgaaatgtttccttctttccatcaccagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgagcagtgctactgtttaccatgtgaggatgaaatgtttccttctttccatcaccagaa 324

                                                                       
Query: 121 gcaaagaagaggaaaagaaagggaagcgaacacaagtggcaaggcaaaaaggtcagctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaaagaagaggaaaagaaagggaagcgaacacaagtggcaaggcaaaaaggtcagctca 264

                                                                       
Query: 181 gttcttggaataagggttaaatcaatggttctcaacctgttggtgacaaccactatggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttcttggaataagggttaaatcaatggttctcaacctgttggtgacaaccactatggga 204

              
Query: 241 ttg 243
           |||
Sbjct: 203 ttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no129_b05.g1 MSMg01no129_b05.g1 CHROMAT_FILE:
MSMg01no129_b05.g1 PHD_FILE: MSMg01no129_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:22 2005
         (184 letters)



>mm_chrX_140102788_140103371
          Length = 584

 Score =  340 bits (176), Expect = 2e-98
 Identities = 182/184 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgccccctagtgaccgcactggaaacatttttctcagctcttgattgttatcccatgat 60
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tcgccccctagtgaccacactggaaacatttttctcagctcttgattgctatcccatgat 260

                                                                       
Query: 61  ctccatcaagggtgccagtattcttacattgctctcactcctggcaagcaaaggcacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccatcaagggtgccagtattcttacattgctctcactcctggcaagcaaaggcacatt 320

                                                                       
Query: 121 ccttctatcaagactgaaggagtaagtcagggatgtgcagcctcctttagagcattcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttctatcaagactgaaggagtaagtcagggatgtgcagcctcctttagagcattcttc 380

               
Query: 181 tcca 184
           ||||
Sbjct: 381 tcca 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)