BAC Information

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BAC

Clone NameMSMg01-129J18
ChromosomeX (Build37)
Map Location 109,788,754 - 109,788,970
singlet/doubletsinglet
Overlap genePof1b
Upstream geneD030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711
Downstream geneLOC623412, EG623428, LOC100039112, Chm, EG664918, Dach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129J18.T7 (MSMg01no129_j18.b1)MSMg01-129J18.TJ (MSMg01no129_j18.g1)
ACCAG337576AG337577
length699735
length of high quality
(start - end)
231 (42 - 272)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no129_j18.b1 PHD_FILE: MSMg01no129_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:05 2005CHROMAT_FILE: MSMg01no129_j18.g1 PHD_FILE: MSMg01no129_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:05 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AAGATCCGCGGAATCATTATCTCGTTCTCTTTTGAACTACAACATTTTCT
CAGGAAGATCTAACAGAAGAATGAAGAAAAATACTCCTTTAAAGATTCAA
ACTCTGTCCTTTATTGAGCAATAAAACAAATTTCAAGCCACATGCTTTGT
AAACAAAAATAACCTAACTGGTTTTGCAAAATAACTTTAACACTATATAT
ATATATATATATATATATGTATATATATATGTATATATATATATATTCCT
ATTTTTAAGTGTATTTCTTTTGCATTGTGTACTTTTAAATCTCTCAGGCA
CAATACTTATCTTAATTGCAATGTTTACAGTAAGTTGAAGCTCTTAAATT
GTAACCTCATCCTCTTTCACTTCCTAGCTTTGCTAAGCTTTACTTCTCCT
TGCAATTATACTGATCTTGAGCCACTTCTCTAATTATGATTCCTTCTATC
TCTATTCACGCTTTTCATTTGAAGTCATTCCTAACTTTCTTTATTCCCGA
TGTGCCTTTGCACTACACACATTTATGAATGCTGATTTACTTTTTATTCA
ACAACATGCAGAAAACCCCCTCCTTTCATTATCGGGACGAAATCCACCTG
ATATTTATCAACTTCATCAAGTTTCCCATTGCTTCGCTCCTGAAGTCGGA
GAAAATACTCTATAATACCGCTTCCCACCCTTCCTATTGCTGCGACTTT
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTATTGCTTTTAAGAGATGGCTTCTCTC
CTTTGCCTGCAATTCAATAAGTATCCTATCATAGGTGGCCAGTAAGCCTC
AGGGATCAGCCTGCCTTTGCACCCCCAGATAAGGGTGACATGTGTGTCAT
TAATTCAGTCTTTGCTTCATGTGTGCTTTTCAGATCAAATTCTGGTCTTT
TATTCTGTCTGCCAAACACATTACTGACAGAACAATCTCCTAAGATCAGG
AACATAGTTTTTAATTGATTTTATTCGTGTGAATGGTTTGTCTGTGGTTG
TGTATCTGCATTTTTTTTATGCCCGCCCCACTGTAGAAGTCAGAATTCCC
TGGATTTGGAATTAGAACTTGTTGGAAACCACCATGTGGGTGCTAGGAAC
TAAACCTGGTTCCTCTGCAAATGTAGCCAGTTCTCTTGGCCACTGAGCCA
TCTCTCCAGCTTCCAGCAATCTAATTTTTGAAAACTCATGAACTAAAATT
CTAGTCTCATATTCAACAAAGTTTTCTGTAGGTCCATTCTTTCAAATTAC
CAAAACTTTGGTTTTAAGATTCTATTATTCATATACCCTTATACTCATCC
ATACTCGTACTGACTTTCAATAAATAGGTCAAACTATTTCAGTATCAAAA
AAATAGTGGTTAACGCCCCTGAACCTAATTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_j18.b1 MSMg01no129_j18.b1 CHROMAT_FILE:
MSMg01no129_j18.b1 PHD_FILE: MSMg01no129_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:05 2005
         (231 letters)



>mm_chrX_109788619_109789249
          Length = 631

 Score =  381 bits (197), Expect = e-110
 Identities = 216/231 (93%), Gaps = 14/231 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattttctcaggaagatctaacagaagaatgaagaaaaatactcctttaaagattcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acattttctcaggaagatctaacagaagaatgaagaaaaatactcctttaaagattcaaa 293

                                                                       
Query: 61  ctctgtcctttattgagcaataaaacaaatttcaagccacatgctttgtaaacaaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctctgtcctttattgagcaataaaacaaatttcaagccacatgctttgtaaacaaaaata 233

                                                                       
Query: 121 acctaactggttttgcaaaataactttaacactatatatatatatatatatatatatgta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 232 acctaactggttttgcaaaataactttaacactatatatatatatatatatatatat--- 176

                                                              
Query: 181 tatatatatgtatatatatatatattcctatttttaagtgtatttcttttg 231
                      ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 175 -----------atatatatatatattcctaattttaagtgtatttcttttg 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)