BAC Information

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BAC

Clone NameMSMg01-129N07
ChromosomeX (Build37)
Map Location 163,978,626 - 163,978,806
singlet/doubletsinglet
Overlap geneFrmpd4
Upstream geneEgfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129N07.T7 (MSMg01no129_n07.b1)MSMg01-129N07.TJ (MSMg01no129_n07.g1)
ACCAG337737AG337738
length718743
length of high quality
(start - end)
184 (120 - 303)39 (65 - 103)
definitionCHROMAT_FILE: MSMg01no129_n07.b1 PHD_FILE: MSMg01no129_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:23 2005CHROMAT_FILE: MSMg01no129_n07.g1 PHD_FILE: MSMg01no129_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTCCTATACCGAGAGATCCGCGGAATTCTGCATT
TATTCAATATTGCTCTATTAACATGAGCATGTTCAAGTTTGTTCACTACA
ACCTCTATTCCCCAATAAGTTGCATCCTAGCCTCTTTTGCCACACCATCT
TAACTGTCCATCATTTCATATAGTTCACCATGCCTCCACTTTCCTCCTGT
TTTGTGTCCCATAGTTTCAGTAACCTGTGCTCAACCCCAGTCTAAAACTA
TTAAATACAACATCACAGGAATGAAAATTCAAAACATTCAAATTGTGCAC
TACTCTTCTGTTTAATTTGCCAAAATTCTTACACGGCCCTGATCACATTT
TATGTTTACCCCCCCCCCCCCCCTTTGACTTATATGTATTTACACTGTGT
CACACCCCTACCCAAAAAACACAAACCACCCGCGGGCAATAGCTCTCTAC
TGCTGTTATATACCATCCTGACCATAGAATTCATAAAGAATTCATCTTTG
TTTTCACTTACTTATTGATAATACTACATCACACATTAATTTTGTTCCTC
TCCTTCTAACATTTATCTATATAACTCACATCCTACATCCTACATCCTTA
TATATCTTCTCCTCCCCCTTAATAATCTATTAATCTTTGATTACCCTCTT
AATTCCATTTGCCCTTGTAACATCACATTTTCTATCCCTTTTTTCATTTC
CACATAAGACCCCCTGGT
ATTTGGGTAGCCTGGTGGCGTCTGGTCGCCACTTTAGGTGAACTATAGAA
TTTCCGCGAAATTCAGGGCTTTGTGTATGTTAGGACACCACTGTATTAGT
TGAGCTTTTTTCCAGCCATTGAGGGAAAGTACTAATGGTCTCATAGTCAT
TTTGTTCTTTCTTACTGGATTTTATTCATTTAATCTTTGATCATTTGCGC
ACTTATTCTGTATTGAACAAGGGCCCAAAGAAGTGAACAAATCCAATGAA
TCCTCTTTTAAAACCTGGAAATAACTTGTTTTTAGTTCTTGAACGTCTTT
CCATACTTCTTTTTTCAATGATTTGCACATGGCATCATCTAGCCTAACCT
TTGTTTTGACCCCTCCCGTCCATGAAAACCTAACTTATTATACTATAGGA
ATGATACTCGTGAATAGAAAAAAATATCTCTACACGTCCCTACCACTTGT
GTATATCTATCCCCTGCCCTTTCTTGCACCCCCTCTGCACTTTGCATCTT
TTATATTTGTTGACCACATTGCACCCCTTCTACTCTACTATGTTATCCTT
CCCTCCTCCGCTATATTTTGATTTTCTTTGATTTCAACCTCTTTGGTCCT
ATGGTTGATAATGCGACACTTCTTTTTCTTTATCGTGCCTTTTTTCTTTT
ATCTCCCGCCTCCACCTCTTTCTAGTTCCCCGACTTAATTACTCTCCTCC
CTTGATCCGACGGATACCCATTCTTTTGAATAATCTGCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_n07.b1 MSMg01no129_n07.b1 CHROMAT_FILE:
MSMg01no129_n07.b1 PHD_FILE: MSMg01no129_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:23 2005
         (184 letters)



>mm_chrX_163978426_163979009
          Length = 584

 Score =  288 bits (149), Expect = 1e-82
 Identities = 173/181 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcatcctagcctcttttgccacaccatcttaactgtccatcatttcatatagttcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcatcctagcctcttttgccacaccatcttaactgtccatcatttcatatagttcacc 322

                                                                       
Query: 61  atgcctccactttcctcctgttttgtgtcccatagtttcagtaacctgtgctcaacccca 120
           ||| ||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||
Sbjct: 321 atgtctccactttcctcctgttttgtgccccatagtttcagttacctatactcaacccca 262

                                                                       
Query: 121 gtctaaaactattaaatacaacatcacaggaatgaaaattcaaaacattcaaattgtgca 180
           |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 261 gtctaaaactattaaatagaacatcacaggaatgaaaattcaaaagatttaaattgtgca 202

            
Query: 181 c 181
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)