CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTAATTGTTTCTTTGCCTATACTTTAGTGTAATTAGGAAGTTTGTGGT
TGAGAACACTTTCACGTGTGATCATGAAAGAATTTACTCAAGAAAATGAA
CAAAAGGAAAAGTTAATTGACCTTTCATTATAATATTAATAATAGCATAT
TGTTAGGAATCTTAGGAATCTAATATTATATATCATATATAACACACCTT
AAATCATATAGTATTACTAACCTGAATTGTTATAGACATATATGATCTTC
CACTGGCCCTCTTTCTCCTTCAAATAGTCCCTTTCTGTTTACAGGTAATA
TGTAGTTAAAGCTAGCATTTATACATGAAAGTAACATGTGGAATTGGCTT
TTTTTCTTTGCTTATTACTTTTTCTTGTTATTTATTGTTTGATTTTTAAA
GACAAGCTTATTATTTGTAACCCAGTCTTACCTCAATCTCAGTTTCACAA
TCTTAGCCTTGGGAAAGCTGGAGCTTTATCAATATATCTAGCACCTTCTT
AGATCTTTAATACTGTAACTATTAGGAGATAGCTGGTAGTTGCCTTGAAA
TAAATAGGAATACACATAAACTTATGAGGATTGTGATCATTTAAAACATG
GTATTGTCAATAGACAATTAAAATCTAAAGATATAATTATTAGGGTCATA
C

NTACCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCCAATACTTTTTTC
TAATTTTTTATTAGATATTTTCCTCATCTTACATTTCAAATGCTATCCCC
AAAGTCCCCTATACCCTCCTGCCGCCCTAGTCCCCTACCCACCCACTACA
CTTCTTGGCCCTGGCGTTCCCTTCTAATGGGGCATACAAAGTTTGCAAGA
CCAAGAGGCCTCTCCAATACCTTTAATATGAAGCGGTATTGTATTTTGTC
AGAGGTTTTTTCAGCACTTAATGAGATGGTCATGTGGCTTTTTCCTTAAG
TTTGTTTATATAGTGTATTATGTTGACGTAGTTTTGTTTATTGAAGAATC
CCTATATTTGCATCTCTGGGATGAAGCCTACTTCATCATGGTGAATGACA
GTTTTGATGTGTTCTTGGATTCGGTTTCAAGAATTTTATTGAATATTTTT
GCATCAATATTTCTTAGCAAAGTTGGTCTGAAGTTCTCCTCCTTTGTTGC
CGGGTTCTTCGTTTCTTTTCAACATGGGTTTCCATTTCTCCACTCTTTGA
ATTAACTGGGGGCCCCTGGTTCTTAATTCCGCGTAAATACCCTGACGGAG
CCATTGATCCTCGTTAACCCCCCTCCTTTTCTTTCTTTTTCCCCCCCTCC
CTATCTCCTCCTCCCTCTTTTCCTTA

Query= MSMg01no129_p02.b1 MSMg01no129_p02.b1 CHROMAT_FILE:
MSMg01no129_p02.b1 PHD_FILE: MSMg01no129_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:31 2005
         (660 letters)



>mm_chrX_124824288_124825348
          Length = 1061

 Score = 1241 bits (642), Expect = 0.0
 Identities = 654/658 (99%), Gaps = 1/658 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactaattgtttctttgcc-tatactttagtgtaattaggaagtttgtggttga 62
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattcactaattgtttctttgccatatactttagtgtaattaggaagtttgtggttta 263

                                                                       
Query: 63  gaacactttcacgtgtgatcatgaaagaatttactcaagaaaatgaacaaaaggaaaagt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaacactttcacgtgtgatcatgaaagaatttactcaagaaaatgaacaaaaggaaaagt 323

                                                                       
Query: 123 taattgacctttcattataatattaataatagcatattgttaggaatcttaggaatctaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taattgacctttcattataatattaataatagcatattgttaggaatcttaggaatctaa 383

                                                                       
Query: 183 tattatatatcatatataacacaccttaaatcatatagtattactaacctgaattgttat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tattatatatcatatataacacaccttaaatcatatagtattactaacctgaattgttat 443

                                                                       
Query: 243 agacatatatgatcttccactggccctctttctccttcaaatagtccctttctgtttaca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agacatatatgatcttccactggccctctttctccttcaaatagtccctttctgtttaca 503

                                                                       
Query: 303 ggtaatatgtagttaaagctagcatttatacatgaaagtaacatgtggaattggcttttt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtaatatgtagttaaagctagcatttatacatgaaagtaacatgtggaattggcttttt 563

                                                                       
Query: 363 ttctttgcttattactttttcttgttatttattgtttgatttttaaagacaagcttatta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttctttgcttattactttttcttgttatttattgtttgatttttaaagacaagcttatta 623

                                                                       
Query: 423 tttgtaacccagtcttacctcaatctcagtttcacaatcttagccttgggaaagctggag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttgtaacccagtcttacctcaatctcagtttcacaatcttagccttgggaaagctggag 683

                                                                       
Query: 483 ctttatcaatatatctagcaccttcttagatctttaatactgtaactattaggagatagc 542
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctttctcaatatatctagcaccttcttagatctttaatactgtaactattaggagatagc 743

                                                                       
Query: 543 tggtagttgccttgaaataaataggaatacacataaacttatgaggattgtgatcattta 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggtagttgccttgaaataaataggaatacacataaacttatgaggattgtgatcattta 803

                                                                     
Query: 603 aaacatggtattgtcaatagacaattaaaatctaaagatataattattagggtcatac 660
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaacatggtatcgtcaatagacaattaaaatctaaagatataattattagggtcatac 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space:   683150
Effective search space used:   683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)