BAC Information

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BAC

Clone NameMSMg01-130M20
ChromosomeX (Build37)
Map Location 100,878,408 - 100,879,182
singlet/doubletsinglet
Overlap geneLOC100042640
Upstream geneLOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2
Downstream geneSlc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542, Uprt, Zdhhc15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130M20.T7 (MSMg01no130_m20.b1)MSMg01-130M20.TJ (MSMg01no130_m20.g1)
ACCAG338464AG338465
length7071,183
length of high quality
(start - end)
233 (129 - 361)760 (87 - 846)
definitionCHROMAT_FILE: MSMg01no130_m20.b1 PHD_FILE: MSMg01no130_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:47 2005CHROMAT_FILE: MSMg01no130_m20.g1 PHD_FILE: MSMg01no130_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGCCTTATCCCCTTAAATCTCAATTTTGCTTTATAATGCAAAA
TGCATTTAGTCCATCATTCATAGCTCTCAACAGTCTCACATAGTTCAACA
GTTCAATGTTTCTTCTAAGACTGGACACAATCTTTTCTGAGTCCCCATAA
AATAAAGATGTTAAATATTTCCATTATACAATGGCACAGAATAAATATTA
CCATTGCAAGAAAGGAAATGGAAGGGTCGCAAGGAAAGACCACACTAGTA
CATGACTAAAGCTCAGCAGGGTGAATAACAATTCCTATAGCCCATTTTTT
GCTATTTGCAATTTTATANTAACCCCCCCCCCCTCCCATGGCCTTCAGCA
GCACCATCCCTTCTTCTTTCCCACCTACAAAATAAATATCTCCTCTATTG
GGTCAACTATACAGCTTGATTACAGTTTTCCTCAGAAGACATTCCAAAGT
TCTGGCATTTTCAGCATCCTGGGGTCCCCTATCTAACTTAGACTTCATTT
TCCAAACTTCATGCAATGGTATTTCAGAGCCTCCTTATAAGGAATACAAC
TCTATTACATACTACCTGGCTTCAGTGCCTTTTTGGAATTTTGACACAGG
CTTCTATGATCCCCTTACTCTTGAATCCTTCATGCCTGTAAATCCAGTAC
CGCAGAA
NCAGCTCTTNNNNACCGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATTTAAGGAGATATACTAAGTACA
CTTCGCACTGGAGATCCCCTTAAACTTTTGGGGGCGCCCTGGGTAGAAGG
ATATGCTTTAAAATGATGTCAAATTGTGCCAAGTTGCCAAAATATAGAAT
TGTGGTGGTTAATCATCATCAACTCAAATGGGTTTAGAACCCCATCTCAT
TTAGGAGATGATGAGGAACCCCTCTAGGTGTGTCTGTGAAGGTTTTTCTG
CAGAGAATAAACCAAAGGGGAAAAACTCACCTGATTGTGAGTGTACTGTT
GCTTTTTGACAATGGAAGGTTTTTGTGTATGCACAGTTACAGCCAAATGG
GCCATATTACACTGAGTTCATGATGAGCAACTTATGTTACAGGTCACCTC
AAGTGGCCCATGGCTAAGTGTTAGAGTCTCTAGTAAGATCTAAATAACTT
TTTAAAGCCAGTTCATTGCTGAGCATACTGATTTATACCTGTAATCTCAG
TAGTTGGGCAGCTGAAGTAAAAAACTGTTGCTAGTTCAAGGCTAGCCTGG
GCTTCATAACAAGTTTTAGTAGGCTGGGTTGAGACTGACCAAACCCAACC
AACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCACCAAA
ACCAACTAACCACCCAAACAACAACAACAACAACACAATAAATAAAGATA
AAGCTGTTTATGAGCCAGGCTTGGTGGCATGGTCCTTTAATTCCAGCTAC
TTGGGAATCAGAATCAGGAGGATTACAAGTTCAAGGCTTTCTGGTTGCTA
CAGAGCAAGTACAAAGCCAGCCTAGGAAACTTGGTGAGACCCTAACTCAA
AAAAGTAAAAACATGGCTGGGGCTATAGTTCCAGTGTTTTACTGAACACA
TGCAAGGTCCTGGCTGCTTATCAAAAGAAAGTAATTTTCTCCTACTTGGT
GGAAAAAAAGTTCTGGAAATCCTTAAGGCCCTCTCCGGTCCCCCCCCCTG
CAGGGGTTTTGACAAAAGGCTCGGGGGAAACCCCGGTTTTTTTCAAATGG
GCCAACACCTTTCTTAGAAAGAAAGGGTTTATTTTGTGTTCCACATTTTT
GAAAAACCCCTGGGGATTTTTTTTTCCCCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_m20.g1 MSMg01no130_m20.g1 CHROMAT_FILE:
MSMg01no130_m20.g1 PHD_FILE: MSMg01no130_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:47 2005
         (760 letters)



>mm_chrX_100878208_100879367
          Length = 1160

 Score = 1222 bits (632), Expect = 0.0
 Identities = 735/780 (94%), Gaps = 25/780 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatactaagtacacttcgcactggagatccccttaaacttttgggggcgccctgggtag 60
           |||||||||||||||||| ||||||||||   | |||||||||||||| |  ||||||||
Sbjct: 201 atatactaagtacacttcacactggagatggacataaacttttgggggtgggctgggtag 260

                                                                       
Query: 61  aaggatatgctttaaaatgatgtcaaattgtgccaagttgccaaaatatagaattgtggt 120
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 261 aaggatatgctttaaaatgatgtcgaattgtgccaagttgccaaaatatagacttgtggt 320

                                                                       
Query: 121 ggttaatcatcatcaactcaaatgggtttagaaccccatctcatttaggagatgatgagg 180
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ---taatcatcatcaactcaaatgggtttagaaccccatctcatttaggagatgatgagg 377

                                                                       
Query: 181 aacccctctaggtgtgtctgtgaaggtttttctgcagagaataaaccaaaggggaaaaac 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 aacccctctaggtgtgtctgtgaaggtttttctgtagagaataaaccaaaggggaaaaac 437

                                                                       
Query: 241 tcacctgattgtgagtgtactgttgctttttgacaatggaaggtttttgtgtatgcacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcacctgattgtgagtgtactgttgctttttgacaatggaaggtttttgtgtatgcacag 497

                                                                       
Query: 301 ttacagccaaatgggccatattacactgagttcatgatgagcaacttatgttacaggtca 360
           ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttatagccaaatgggccagataacactgagttcatgatgagcaacttatgttacaggtca 557

                                                                       
Query: 361 cctcaagtggcccatggctaagtgttagagtctctagtaagatctaaataactttttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cctcaagtggcccatggctaagtgttagagtctctagtaagatctaaataactttttaaa 617

                                                                       
Query: 421 gccagttcattgctgagcatactgatttatacctgtaatctcagtagttgggcagctgaa 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gccagttcattgctgagcatattgatttatacctgtaatctcagtagttgggcagctgaa 677

                                                                       
Query: 481 gtaaaaaactgttgctagttcaaggctagcctgggcttcataacaagttttagtaggctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtaaaaaactgttgctagttcaaggctagcctgggcttcataacaagttttagtaggctg 737

                                                                       
Query: 541 ggttgagactgaccaaacccaaccaaccaaccaaccaaccaaccaaccaaccaaccaacc 600
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 738 ggttgagactgaccaaacccaaccaaccaatcaaccaaccaaccaaccaaccaacca-cc 796

                                                                       
Query: 601 aa--ccaa----ccaccaaaac--caactaaccac--c--caa--------acaacaaca 640
           ||  ||||    ||||| ||||  |||| ||| ||  |  |||        |||||||||
Sbjct: 797 aaaaccaatgaaccacccaaacaacaac-aacaacaacaacaacaacaacaacaacaaca 855

                                                                       
Query: 641 acaacaacacaataaataaagataaagctgtttatgagccaggcttggtggcatggtcct 700
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 acaacaacacaataaataacgataaagctgtttatgagccaggcttggtggcatggtcct 915

                                                                       
Query: 701 ttaattccagctacttgggaatcagaatcaggaggattacaagttcaaggctttctggtt 760
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 916 ttaattccagctacttgggaatcagaatcaggaggattacaagttcaaggccttctggtt 975


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 1160
Length adjustment: 10
Effective length of query: 750
Effective length of database: 1150
Effective search space:   862500
Effective search space used:   862500
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)