BAC Information

Click to search

BAC

Clone NameMSMg01-132J02
ChromosomeX (Build37)
Map Location 71,579,488 - 71,579,969
singlet/doubletsinglet
Overlap genePlxna3
Upstream geneLOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E
Downstream geneLage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132J02.T7 (MSMg01no132_j02.b1)MSMg01-132J02.TJ (MSMg01no132_j02.g1)
ACCAG339776AG339777
length706676
length of high quality
(start - end)
---481 (71 - 551)
definitionCHROMAT_FILE: MSMg01no132_j02.b1 PHD_FILE: MSMg01no132_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:07 2005CHROMAT_FILE: MSMg01no132_j02.g1 PHD_FILE: MSMg01no132_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCAAAATTTGCGGCGCCATAGGAATTCTAATTTTGAACCNGCACGGAA
NNCNGNNGGTTATTCTGGACGCGCGNGCCNAGGNNNNCNANCNCCAGGGN
NGNCNCCNNNNGNGAANNNCCCCCCANNCNANNNCCANNNNNGANCCNGA
ANNGNNNNGNACAANACCNNCACCAGAACGGNAGGCGAACCANCCAGGGA
ACCCNGCGGCNCCCCNNAAAGGGCNCCAACNCGNNAACCAGCGAACAACA
GCATTTTTTTAAGGGAGCGANCNANGACCNACCCAAAGACCNCNGACACC
ACCACGAGACGCGAAANTATTTTTTTTTTTCGCANNCCCGNGNAGGGGAA
NCCAAGGCACAATGTCCCCCCACAACCGGGNACAGAAGAAGCCAAGNAGC
CANGGACCCGGNAGCACACGAACAAGCCCAAGCCAAACGCCAACAGGCCA
ACCCAGGNGCAACCGGCCCCGCCGNCNCCGACNGCGCNAGACCCCCCAGA
AAACAGAGAGACAACACACCAGAAAAAAGCACCCCCCCCCGAAAGAACCA
GACCAAAGCAAAACACAGGAACCACCCCCGAAAAGAACGACAAAACCAAA
AAGAAACCAGANCACGGAAGAACCCAGGGGACCCGGGGCCCCGAAGGCCC
CCGAAAAAGAACCCACAGGGCCCCAGAAAAACGAAAACAAAAACGAAAAA
CACAAC
CCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCCCTGCCCCAAACACCCCAGATTGCCCC
ATCCCACTGACCATGCCCTCTGGTAAGTGTCTGGAGCTCCTGAAGGGATG
GTGAAGGACATCGTAACTCTCCAGAGGGCAGCAGAATAGCCTCACTTTCA
GTCACCTCCTCAAAGGAACAGCTCACACCCACACTGAGGTCTGGCACGTT
GCGCATGGCTACGGTCAGCTGGGGAAGGCAGAGGGTTCAGAGCAGGGTGC
ACCCTCCCTCATGAAGCATATACAGGGCCAAGTATCCTCTATGTCACTTA
CCTGCACCCCAGAGGATGTCACTGACACATTATTGGGACGGACCCGCACC
TGTATACATTTGCTCAGCTCTTCTGCAAAGCCATGTGGGGCAGAGGCACC
TGGACAGGCCCCTTCACGGCAGCACCTGCATGGAGACAGGCCAGAGCAGT
CCGAGCACTGTCCCAGGAGGGCCCAGATGGGGGTGCAGTAAGAGGCTGAG
GTGTGACAGAAGACAGCATACCCAGCTCATACTGCCAGGCAACAGTGTAC
CTTGGCCTCATCCCCTGAGATCCAGGGAACGGCACTCAGGCAAGAAGTTG
CGCCGATTAGCTGGATGAAGTGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_j02.g1 MSMg01no132_j02.g1 CHROMAT_FILE:
MSMg01no132_j02.g1 PHD_FILE: MSMg01no132_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:07 2005
         (481 letters)



>mm_chrX_71579288_71580169
          Length = 882

 Score =  924 bits (478), Expect = 0.0
 Identities = 481/482 (99%), Gaps = 1/482 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccctgcccca-aacaccccagattgccccatcccactgaccatgccctctggtaagtg 59
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgccctgccccacaacaccccagattgccccatcccactgaccatgccctctggtaagtg 623

                                                                       
Query: 60  tctggagctcctgaagggatggtgaaggacatcgtaactctccagagggcagcagaatag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctggagctcctgaagggatggtgaaggacatcgtaactctccagagggcagcagaatag 563

                                                                       
Query: 120 cctcactttcagtcacctcctcaaaggaacagctcacacccacactgaggtctggcacgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctcactttcagtcacctcctcaaaggaacagctcacacccacactgaggtctggcacgt 503

                                                                       
Query: 180 tgcgcatggctacggtcagctggggaaggcagagggttcagagcagggtgcaccctccct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgcgcatggctacggtcagctggggaaggcagagggttcagagcagggtgcaccctccct 443

                                                                       
Query: 240 catgaagcatatacagggccaagtatcctctatgtcacttacctgcaccccagaggatgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 catgaagcatatacagggccaagtatcctctatgtcacttacctgcaccccagaggatgt 383

                                                                       
Query: 300 cactgacacattattgggacggacccgcacctgtatacatttgctcagctcttctgcaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cactgacacattattgggacggacccgcacctgtatacatttgctcagctcttctgcaaa 323

                                                                       
Query: 360 gccatgtggggcagaggcacctggacaggccccttcacggcagcacctgcatggagacag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gccatgtggggcagaggcacctggacaggccccttcacggcagcacctgcatggagacag 263

                                                                       
Query: 420 gccagagcagtccgagcactgtcccaggagggcccagatgggggtgcagtaagaggctga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gccagagcagtccgagcactgtcccaggagggcccagatgggggtgcagtaagaggctga 203

             
Query: 480 gg 481
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space:   410712
Effective search space used:   410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)