Query= MSMg01no136_o20.b1 MSMg01no136_o20.b1 CHROMAT_FILE:
MSMg01no136_o20.b1 PHD_FILE: MSMg01no136_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:27 2005
(643 letters)
>mm_chrX_10245575_10246617
Length = 1043
Score = 990 bits (512), Expect = 0.0
Identities = 533/540 (98%)
Strand = Plus / Minus
Query: 104 ccctatcagatttaagattggtaaaaatcctttcccaatctgttggtggcttttttgtct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 ccctatcagatttaagattggtaaaaatcctttcccaatctgttggtggcttttttgtct 984
Query: 164 tattgacagtgtcttttgccttacagaagctttgcaattttatgaggtcccatttgtcaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tattgacagtgtcttttgccttacagaagctttgcaattttatgaggtcccatttgtcaa 924
Query: 224 ttcttgatcttacaggacaagccattactgttctgtttagaatgatttttttcatatttc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 ttcttgatcttacaggacaagccattactgttctgtttagaatgatttttttcatatttc 864
Query: 284 ctcaattttttaatgcttctaattttacacaaactttatataaaaggtagatggagcttc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ctcaattttttaatgcttctaattttacacaaactttatataaaaggtagatggagcttc 804
Query: 344 tctgaaagtaggtgaaagtaaaattttctcaccctctatatttaccaagcaagaaggagg 403
||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct: 803 tctgaaagtagatgaaagtaaaattttctcattttctatatttaccaagccataaggagg 744
Query: 404 tgttccaatttgaatttctgaaatacttctcatccattattttgctgctcatgatatttc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgttccaatttgaatttctgaaatacttctcatccattattttgctgctcatgatatttc 684
Query: 464 ctgacttatctagattccttatagtatatcccaaagtctaacatctaataggaacttttt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgacttatctagattccttatagtatatcccaaagtctaacatctaataggaacttttt 624
Query: 524 gaacatggaaattggctagttattttcctcttcaccctccaaaatacaatgtatttacta 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaacatggaaattggctagttattttcctcttcaccctccaaaatacaatgtatttacta 564
Query: 584 tgagttatatgaatactctttaaatgagcttaaaatgtttagcattgagaatggagggtt 643
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 tgagttatatgaatactctttaaatgaacttaaaatgtttagcattgagaatggagggtt 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_o20.g1 MSMg01no136_o20.g1 CHROMAT_FILE:
MSMg01no136_o20.g1 PHD_FILE: MSMg01no136_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:27 2005
(342 letters)
>mm_chrX_10079871_10080612
Length = 742
Score = 542 bits (280), Expect = e-158
Identities = 316/342 (92%), Gaps = 24/342 (7%)
Strand = Plus / Plus
Query: 1 ttgcctgtataaggttaattggctgtgttatctctgatgagacgagcttaagggactgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcctgtataaggttaattggctgtgttatctctgatgagacgagcttaagggactgga 260
Query: 61 gaacactggataaagtctagttcaaaaacagaaatttcccaatgctgctaaattccagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacactggataaagtctagttcaaaaacagaaatttcccaatgctgctaaattccagtt 320
Query: 121 tcaaaaaaaagacatttgtagatagacatctctatttttttgcttgtaaaaccaattcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaaaaaaagacatttgtagatagacatctctatttttttgcttgtaaaaccaattcta 380
Query: 181 tgatagcagtaatacacacacagagagagagagagagagagagagagagagagagagaga 240
|||||||||||||||||||||| | ||||||||||||||||| |
Sbjct: 381 tgatagcagtaatacacacacacacagagagagagagagaga-a---------------- 423
Query: 241 gagagagaaagagagagagagtaaatactacattatgtttggatcctctgacttccctct 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ---agagaaagagagag----taaatactacattatgtttggatcctctgacttccctct 476
Query: 301 acatcaagcctctttaattgtaaagatttgattaataaggat 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acatcaagcctctttaattgtaaagatttgattaataaggat 518
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 202 agagagagagagagagagagagagagagagagagag 237
||||||||||||||||||||||||||||||||||||
Sbjct: 612 agagagagagagagagagagagagagagagagagag 647
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 204 agagagagagagagagagagagagagagagagagag 239
||||||||||||||||||||||||||||||||||||
Sbjct: 612 agagagagagagagagagagagagagagagagagag 647
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 206 agagagagagagagagagagagagagagagagagag 241
||||||||||||||||||||||||||||||||||||
Sbjct: 612 agagagagagagagagagagagagagagagagagag 647
Score = 70.3 bits (36), Expect = 2e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 208 agagagagagagagagagagagagagagagagagag 243
||||||||||||||||||||||||||||||||||||
Sbjct: 612 agagagagagagagagagagagagagagagagagag 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 6
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
