BAC Information

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BAC

Clone NameMSMg01-139B05
ChromosomeX (Build37)
Map Location 57,513,572 - 57,513,976
singlet/doubletsinglet
Overlap geneAtp11c
Upstream geneF9, EG434782, Mcf2
Downstream geneLOC666517, LOC631784, LOC100039611, LOC100039621, Gm715, Hspa9-ps1, EG236831, LOC666559, LOC671636, Sox3, EG631922, Rpl7l1-ps, LOC627159, EG631990, LOC632000, LOC100039759
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139B05.T7 (MSMg01no139_b05.b1)MSMg01-139B05.TJ (MSMg01no139_b05.g1)
ACCAG344571AG344572
length705704
length of high quality
(start - end)
408 (44 - 451)415 (74 - 488)
definitionCHROMAT_FILE: MSMg01no139_b05.b1 PHD_FILE: MSMg01no139_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:20 2005CHROMAT_FILE: MSMg01no139_b05.g1 PHD_FILE: MSMg01no139_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCGGAA
TTCCAAGTTTACTCATCGATTACCCAATATGGAAGTGACCTGACTCATAA
AACCCATGTGTAGCTATTCAGCTTCATTCAGGGACAGAGAGATTCACTGT
CTTCTCATTGGTTTCCGAGACTGCAAACCCAGACTTCTGAGTTGCCTTAA
TATCACAATCGGTTTAGTGTTGTGCACAATTAAGCACATACTGAAGGCCT
TAAATAATATTCAGGTGGCTTTTTCCCTTCCAGATAATTTTTTTTGGTTT
GTACTTGAAATAATGACTCTTCTTAATTGTTTTATATTATTATATTAGCA
AATAGCTTATCAGTTAAACAGACTTTTATTTGATGTGTCAATAGCCCTGT
TAAAGCACATTTTTATTTTTAACAAAACTAAAGGCGCACACTTGATTTGT
AACATTTAAGCAACTCACAAATATAAAAACTAATCAGGCATTTGGTCACT
GTACAAAATTGACACTATATGGACATATTCTCTCTTTAGGTCATTAAAGG
AAAAGAAGGCCGTCAAGCACCCAGGAATAGTGATTATTCTGTCCCAAAGC
CCACGCATTCCAAGAAATCGCTATTGGCCCACGGACATCTATACTATGTG
TAAATACCACATCTTGTACAATATCTCCTCCTACATGGATGCGGTCAAAT
ATTTA
CGATGAAAGNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGACAAAATGCTCAACATCCTTAACCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAG
GACACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GTTACATCTACACAATGGAGTACTACTCAGCTATTATTAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGACAAGTG
GATATTAACCCCAAACCTACGATACCCTAGATATTAGATATACTTTTGCT
AAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_b05.b1 MSMg01no139_b05.b1 CHROMAT_FILE:
MSMg01no139_b05.b1 PHD_FILE: MSMg01no139_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:20 2005
         (408 letters)



>mm_chrX_57513369_57514176
          Length = 808

 Score =  752 bits (389), Expect = 0.0
 Identities = 401/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaagtttactcatcgattacccaatatggaagtgacctgactcataaaaccca 63
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggaattccaagtttactcattgattacccaatatggaagtgacctgactcataaaaccca 549

                                                                       
Query: 64  tgtgtagctattcagcttcattcagggacagagagattcactgtcttctcattggtttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tgtgtagctattcagcttcattcagggacagagagattcactgtcttctcattggtttcc 489

                                                                       
Query: 124 gagactgcaaacccagacttctgagttgccttaatatcacaatcggtttagtgttgtgca 183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cagactgcaaacccagacttctgagttgccttaatatcacaatcggtttagtgttgtgca 429

                                                                       
Query: 184 caattaagcacatactgaaggccttaaataatattcaggtggctttttcccttccagata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caattaagcacatactgaaggccttaaataatattcaggtggctttttcccttccagata 369

                                                                       
Query: 244 attttttttggtttgtacttgaaataatgactcttcttaattgttttatattattatatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attttttttggtttgtacttgaaataatgactcttcttaattgttttatattattatatt 309

                                                                       
Query: 304 agcaaatagcttatcagttaaacagacttttatttgatgtgtcaatagccctgttaaagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agcaaatagcttatcagttaaacagacttttatttgatgtgtcaatagccctgttaaagc 249

                                                        
Query: 364 acatttttatttttaacaaaactaaaggcgcacacttgatttgta 408
           |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 248 acatttttatttttaaaaaaactaaaggtgcacacttgatttgta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)