NNAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGATCC
GCGGAATTCTAGCATCACTTATTGATTCTGTTTAGCACCATCAAATGTTT
GGCAAATTGCTAATGCCAATCAATTTGGGGAAGAACGAGCAAGTTTTTTT
TCTTCTTCCAATTTTTCATTAAAACAAATGTCAGCTAAAAAACTAGTGTT
TATGCAAATTGAAATTGTATAAACTTTTAATTATATAATTATCTCATGAA
CTCTTTCCTGTATGTTGATATCATACAGTTAATTTGCTCATTTTGGAAAG
GGAGAGTTGAAAAGGATGAAGGACAAAAGTGAGTGGTGCCTTGTAATCCT
TTGATAATGAGCTGAGAATAGAGGTCAAAGCTTAGTTGCTACAGTTTTTT
TTAACCCTTTCTGAGATACAATTGAGATGTGAATTGTTGTGGATTTCCCT
GGTGCTGTTTGTATTTTGATGCTAATTAGGCTTCCCCAAGAGGGGGATGC
CTCAGAAGAGTGCTTTTGTCTCTAGCTACTTATGTAGATGAGGATGCCTA
AAATGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGTGAATAGGGGAATG
CCAAGGCCAGGAAGAGGAAGTGGGTGGATTGGGGAGCAGGGTGGGGAGAG
GTTATCCTTTTCCTCTCTCCTTTTTTCCCCTCTTCTCCCTTT

NNNAACGATGAAGTGGGAGGCTGGCGGCGCCTTTCGACAAXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCACCTGAGGAATACCGAAAGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACACTGTGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCTTGGATGTGGAGAAAAAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCCGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAA

Query= MSMg01no140_n03.b1 MSMg01no140_n03.b1 CHROMAT_FILE:
MSMg01no140_n03.b1 PHD_FILE: MSMg01no140_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:40 2005
         (595 letters)



>mm_chrX_65765500_65766495
          Length = 996

 Score = 1104 bits (571), Expect = 0.0
 Identities = 585/591 (98%), Gaps = 5/591 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattctagcatcacttattgattctgtttagcaccatcaaatgtttggcaaattgctaa 69
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaattctagcatcatttattgattctgtttagcaccatcaaatgtttggcaaattgctaa 532

                                                                       
Query: 70  tgccaatcaatttggggaagaacgagcaag-ttttttttcttcttccaatttttcattaa 128
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 531 tgccaatcaatttggggaagaacgagcaagtttttttttcttcttccaatttttcattaa 472

                                                                       
Query: 129 aacaaatgtcagctaaaaaactagtgtttatgcaaattgaaattgtataaacttttaatt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aacaaatgtcagctaaaaaactagtgtttatgcaaattgaaattgtataaacttttaatt 412

                                                                       
Query: 189 atataattatctcatgaactctttcctgtatgttgatatcatacagttaatttgctcatt 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atataattatctcatgaactctttcctgtatgttgatatcatacagttaatttgctcatt 352

                                                                       
Query: 249 ttggaaagggagagttgaaaaggatgaaggacaaaagtgagtggtgccttgtaatccttt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttggaaagggagagttgaaaaggatgaaggacaaaagtgagtggtgccttgtaatccttt 292

                                                                       
Query: 309 gataatgagctgagaatagaggtcaaagcttagttgctacagttttttttaaccctttct 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gataatgagctgagaatagaggtcaaagcttagttgctacagttttttttaaccctttct 232

                                                                       
Query: 369 gagatacaattgagatgtgaattgttgtggatttccctggtgctgtttgtattttgatgc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gagatacaattgagatgtgaattgttgtggatttccctggtgctgtttgtattttgatgc 172

                                                                       
Query: 429 taattaggcttccccaaga---gggggatgcctcagaagagtgcttttgtctctagctac 485
           |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 171 taattaggcttccccaagaggggggggatgcctcagaagagtgcttttgtctctagctac 112

                                                                       
Query: 486 ttatgtagatgaggat-gcctaaaatgccatcaatgggaggagaggcccttggtcttgtg 544
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ttatgtagatgaggatggcctaaaatgccatcaatgggaggagaggcccttggtcttgtg 52

                                                              
Query: 545 aataggggaatgccaaggccaggaagaggaagtgggtggattggggagcag 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  aataggggaatgccaaggccaggaagaggaagtgggtggattggggagcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 996
Length adjustment: 10
Effective length of query: 585
Effective length of database: 986
Effective search space:   576810
Effective search space used:   576810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)