BAC Information

Click to search

BAC

Clone NameMSMg01-141E14
ChromosomeX (Build37)
Map Location 20,791,843 - 20,792,465
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a7, LOC668277, LOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268
Downstream geneEG629024, EG331392, Agtr2, EG668997, Slc6a14, LOC100043180, LOC100043182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141E14.T7 (MSMg01no141_e14.b1)MSMg01-141E14.TJ (MSMg01no141_e14.g1)
ACCAG346198AG346199
length1,2691,245
length of high quality
(start - end)
322 (84 - 405)621 (94 - 714)
definitionCHROMAT_FILE: MSMg01no141_e14.b1 PHD_FILE: MSMg01no141_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:31 2005CHROMAT_FILE: MSMg01no141_e14.g1 PHD_FILE: MSMg01no141_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:31 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATTCTTTTTTNGGCATTGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGG
AATTCTCCACACCTCCAGGCGCCCTTTTGAGCCGCTGGGAATATGCAGAG
GTCTCCCTGTCAACCTCCTTTTCTGACCAGTGGCCCCCCTGAGCAGGGAG
AGGGGTCGCGCTGCTACTATCAAACTAGAGAGAACTGGTTACCTTCACGG
TTCGCCATCACTTTGCCACCTCCTGTGGGAGTCCCAGCCACCTCAAAGCA
CAGAGATCCACTTGCTGAGGTGTGTCTTTCACAGACCAGCCTGAGGTTCT
CAACACTTCCCTAAAGGCGTCCTCCAATCACTATCCTTCCTGCACTGTTG
CAGAGGCTCAGTGGCCAAATTTCAGCCTATGCCAGGACACACCACGCCTC
CAATCACTTTTGAGGGGTGGGGAAAGCAGCTATCTTCACATGCCTGCTAC
TCTGCTCCCGCGGGGCATTTTCACAAAGTTCAACCACTGGGATGGAAAAC
CTGGAAGAACTTCATCATGCCACATCCTTTTCACCCAGCTCCTTAAATAT
ATTCTCTGTTGTATACTAGGGAAATCCTGATCATTACTAACGGGCTCTAA
ATAATTCTGTTCACACTAATCTCAATTTGTTTTATTTCTTTTCATTTTGA
TTTCTCAGTTCATCTTTTTGGTTATTTTACCTCCCTGTTTCCTGTGACTC
AAGTGTGTGCCTGATGCCTGTGCAATCCAGATTAGGTCTCAGTTCTCCCG
CATATCATGGCTTTGACCAATGTGTTGTGTAATCCATCCTTTGTTGTTTG
AATTAATGTTCTTTACTTACATGGTGTCTTAATTTATTTATATATATTTA
TTGTACGATCCAATGAAATTTTAATTATCTGTTCTCTCTTGTAATCTACT
CTTAATTTCGCTTTTTCTTTTTTTCTTTATTCGTTTCTTTCTATGTCGTT
TAATCTTAATCTTTCTTTCTCCTTTATTGTTCTTTTTCTTATTACTTTTT
TTGTTATCCTCTTTACTTTTTTATTTCATTCTATGATTTTGTTTTTCTTT
TCTTTTTTTTTTTTACCTGTTATTTTTCTCTCTATACTTTTTTTTTTTAC
TTTTTCTGTATTTCTTTATTTTATTATTATTTTCTCCTTATTTATTCATC
GTTACTTCCTTTTGTCTCTCTATCTTTTATTCTTTTAACCTATCCTCTCT
ATTCTCTTTACTCCTTCTTTATCTCTTTATTTCTCCTTTTACTTTCTTGT
CTATCTATCCTTCTTCTCC
NCCCTTTTCTTTNNTTTAGCATGTGAGNCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTTGAAAAGTTGAACAC
CATGATGATTTCCTCAAACTCCCCTGTAAAGCCCTACTCCTACCCACATT
GGAGAAACATGCAACAGATTCAGAGAGGTTGTGAGAATGTGTCTATCGAT
TTCTGTGTCCTCCTGTAGGTGCAACATATGTGCCTGTGTAACTACCGTAA
TCAAACAAGAAGAGGTCTTGAATTCAAGAAAGTTTTGAGAGGGAATGCTG
GAGCAGTTCACATAAGGAGACAGAGGGATGAAAATTGTATTAATATGCTC
TCACCCATGATAATCTCCAAAAGAAAGAATTTAGGTTAAAGAATAAAAAA
ACAATAAGAGCTTATTTTTTGTGTTCTATATGAATTGCTCCTTATCAGGT
CTTCATTTGGAAATGTCAATCATTCATGAAACTCACGTGGAGCTTTCACC
CCTGGATGCTTTTTCATAGTTCTTTAGTTAGTTTCTGTAAGACATGATCT
TTCTCAGTAAGTGGGTCTGACCAGGACCTCCCATAGTCCAGGCTGGCCAG
AGACATACAGCAATCTGCCTGCCTCTCTCTCCAGAAGGATGAAGTTACAG
GCATAGGCCAATAATGCCCATATCCCTGTGATTTCAGTAAGAAATATCCA
GAGTTATGTAAATGTTCCTGTAACAGGCCCCTTAAATTTAGCTGTTTTGG
TTACCCATTGAAATATTATTTGTTTACTTTTTCCTACTCATTCATGATGT
GTTGAGAAAATCCCTTGGCAGGAAGTGTAACCTATTATCAGGTAAGTTTT
GTCCTTTACCTTTGCTACTATCATGACAATATTTTCTGAGATTTTGTGAG
GCTTAGTTTTAATGAGTTTTTTCGTGTTTACATTGCTACTTTGTGTGTCT
TTAATTCTATAATTCCTTTCTAATCTTAAATATAATTAAATTATTAAATG
TTTTTTTTGTAGTATCTTTTTTTTTTCTGAACATTTGGTTTATTTATTTT
GAAAATTTTTTATTTTGTGGTTATTGATTACCTCTTTTAAAAATCTTTTA
TTTAGTTATATATTTGTTTTATAATATTTATTTCACTCTCCTTTCTTATT
TATGTTGTATCTTCAAACTACTTGTTTTTTATTGTTTTTTTCTATTATTA
TTATATTATCTTTTTTTAATTTTTTCCTTTTAATTTTTTTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_e14.g1 MSMg01no141_e14.g1 CHROMAT_FILE:
MSMg01no141_e14.g1 PHD_FILE: MSMg01no141_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:31 2005
         (621 letters)



>mm_chrX_20791643_20792664
          Length = 1022

 Score =  735 bits (380), Expect = 0.0
 Identities = 565/630 (89%), Gaps = 16/630 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaacaccatgatgatttcctcaaactcccct-gtaaagccctactcctacccacattgg 59
           ||||||||||||||| |||||||||||| ||| || |||||||||||||| |||||||||
Sbjct: 201 tgaacaccatgatgagttcctcaaactcacctggt-aagccctactcctatccacattgg 259

                                                                       
Query: 60  agaaacatgcaacagattcagagagg-ttgtgagaatgtgtctatcgatttctgtgtcct 118
           || |||||| ||||||||||||| || |||||||||||| |||||| || ||||||||||
Sbjct: 260 agtaacatggaacagattcagag-ggtttgtgagaatgtatctatcaatctctgtgtcct 318

                                                                       
Query: 119 cctgtaggtgcaacatatgtgcctgtgtaactaccgtaatcaaacaagaagaggtcttga 178
           |||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 319 cctgtaggtgcaacatgtgtgcctgtgtaactaccctaatcaaacaagaagaggccttga 378

                                                                       
Query: 179 attcaagaaagttttgagagggaatgctggagcagttcacataaggagacagagggatga 238
           ||||||||||  ||||||||||||| ||||||||||||||||||||||| |||| || ||
Sbjct: 379 attcaagaaaaatttgagagggaatactggagcagttcacataaggagatagagagacga 438

                                                                       
Query: 239 aaattgtattaatatgctctcacccatgataatctccaaaagaaagaatttaggttaaag 298
           |||| ||||||||||||||| |||||||| |  |||  ||||||||||||||||||||||
Sbjct: 439 aaatggtattaatatgctcttacccatgacaccctctgaaagaaagaatttaggttaaag 498

                                                                       
Query: 299 aataaaaaaacaataagagcttattttttgtgttctatatgaattgctccttatcaggtc 358
           ||| |||| ||||||||| ||||||  ||| || |||||  |||||||||||||||||||
Sbjct: 499 aat-aaaacacaataagaacttattgcttgggtcctatacaaattgctccttatcaggtc 557

                                                                       
Query: 359 ttca--tttggaaatgtcaatcattcatgaaactcacgtggagctttcacccctgga--- 413
           ||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||| |   
Sbjct: 558 ttcatttttggaaatgtcaatcattcatgaaactcacatggagttttcacccctgaacat 617

                                                                       
Query: 414 tgctttttcatagttctttagttagttt-ct-gtaagacatgatctttctcagtaagtgg 471
           |  |||||||||||| |||||||||||| || |  ||||||| |||| ||||||| ||||
Sbjct: 618 t--tttttcatagttgtttagttagtttcctcg--agacatggtcttgctcagtatgtgg 673

                                                                       
Query: 472 gtctgaccaggacctcccatagtccaggctggccagagacatacagcaatctgcctgcct 531
           |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 674 gtctaaccaggccctcccatagtccaggctggccacagacatacagcaatctgcctgcct 733

                                                                       
Query: 532 ctctctccagaaggatgaagttacaggcataggccaataatgcccatatccctgtgattt 591
           ||||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 734 ctctctccagaaggatgaacttacaggcatgggccaataacgcccacatccctgtgattt 793

                                         
Query: 592 cagtaagaaatatccagagttatgtaaatg 621
           ||| ||||| ||||||||||| ||||||||
Sbjct: 794 caggaagaattatccagagttctgtaaatg 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space:   618332
Effective search space used:   618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)