BAC Information

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BAC

Clone NameMSMg01-144H10
ChromosomeX (Build37)
Map Location 71,121,028 - 71,121,430
singlet/doubletsinglet
Overlap geneL1cam
Upstream geneCetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4
Downstream geneAvpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144H10.T7 (MSMg01no144_h10.b1)MSMg01-144H10.TJ (MSMg01no144_h10.g1)
ACCAG348529AG348530
length727724
length of high quality
(start - end)		434 (49 - 482)403 (74 - 476)
definitionCHROMAT_FILE: MSMg01no144_h10.b1 PHD_FILE: MSMg01no144_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:18 2005CHROMAT_FILE: MSMg01no144_h10.g1 PHD_FILE: MSMg01no144_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGAGGCGC
GGAATTCCCTTGCTATACCTAGTAGTACATTTCTGTAACTCCAGCTCTCT
AAAAGCTGTGGCAAGTGGATCTTTGTGAATTCAAAGCCAGACTGGTCCAC
ATAGTTCTAGGTGAGATAAGCTGTGTAGTGAGACCTTGTCTCAAAAAATG
AGGGGAATTGGCTAATAGAAATTATGTCTTATTTTTTGTTCCTGTGGTAA
AACACCAGGAACAAGGCAACTTATAAAGAAAGCATGTAATTTGGAACTTA
TGGTTTTAGGGAGGTAGAGTCTTTTCTGTCTCTAATATGTAGAACAAGAT
GTTAGCTTTCAGATGTCCTTGCCACTGTGCCCTGCTCCACCATCATGAAC
TCTAATCTTCTGAAACTACCCCCCAACTAAACACTATTTTATTAATTGCA
TTGTTCATGGTGTTTTGCCACAGCATTATAAAAGCAACTAAGACAGATGG
TTCAGTCATCAAAGCACTTGCTGCTCTTCATAGGACCTGAGTCTGATTCT
AAACACCCTGCTGGGTAGCTCACAACTTCCTATAACTCACGCTAGAGAAA
GGGGCAAATGATTCCTCCGGCCTCCATGGGTACTTCTACTCAATTATACA
TTCCCCCCACAGATATACCCTTTATTGCTAGGCCTGCTGCTTATTTTGCC
TTTAATCCCAGCCAAGTGGGTAGCAGA

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCCCAACAGAGCACAGACCAGGATTC
AGCTTTCCAGAGTATTGAAGGCAGAGCCACAAAGCAGTAGCAGGTATCAG
AACTCTCCTGGCCCTGGATTTCGTGGGTCAGGTAGGATGAGCCTCCCACT
GAGGGGCTTAAGGGGCCACCAAACAAATAGGCAATCCATGTGAACTAGTG
GAGGTAAATGTGATGAATTTAGTAGCATCTGACTAGTCTCCAATTCCAAA
TGACTCCTGGAAGTGGCTCAGACTCTGCCAGGCCCCCAGCAGATCAGACC
CTTAGGGCTTCTATTCCCAAAGGGTGAAAGGGCATAAGAGGCACAGGAAG
CATGGGAGTGGACAACGCCGCTTCTGTCCTCCCTATGGCCTAAGCATTCC
TAAGGCATGAACGAAGCCATCTGGGGAGGAGACCCATGGGAATAGCCAAA
CCCTGGACTGGTCAGAGGCTCTGCCCCCCACAAGAACCAGCGCTGTATTA
GCCAGCCACCACCCCGGTCCCACTCCTTCCCAGTATAGACTCTGTATTAT
GCCCTGAAGAGATCCTTGTATTCCTAGGAAGATGTGCATGTTTGCTTGCT
GTCTCTCAGTAAGATTCCCTCTTATCTACCTACATGTACTGACTATCCTT
CCTGAGTCTATTGTCTCTTAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_h10.g1 MSMg01no144_h10.g1 CHROMAT_FILE:
MSMg01no144_h10.g1 PHD_FILE: MSMg01no144_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:18 2005
         (403 letters)



>mm_chrX_71120828_71121630
          Length = 803

 Score =  733 bits (379), Expect = 0.0
 Identities = 397/403 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccaacagagcacagaccaggattcagctttccagagtattgaaggcagagccacaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 accccaacagagcacagaccaggattcagctttccagagtattgaaggcaaagccacaaa 260

                                                                       
Query: 61  gcagtagcaggtatcagaactctcctggccctggatttcgtgggtcaggtaggatgagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtagcaggtatcagaactctcctggccctggatttcgtgggtcaggtaggatgagcc 320

                                                                       
Query: 121 tcccactgaggggcttaaggggccaccaaacaaataggcaatccatgtgaactagtggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tcccactgaggggcttaaggggccaccaaacaaataggcaatccatgtgaactagtgaag 380

                                                                       
Query: 181 gtaaatgtgatgaatttagtagcatctgactagtctccaattccaaatgactcctggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaatgtgatgaatttagtagcatctgactagtctccaattccaaatgactcctggaag 440

                                                                       
Query: 241 tggctcagactctgccaggcccccagcagatcagacccttagggcttctattcccaaagg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggctcagacactgccaggcccccagcagatcagacccttagggcttctattcccaaagg 500

                                                                       
Query: 301 gtgaaagggcataagaggcacaggaagcatgggagtggacaacgccgcttctgtcctccc 360
           |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||
Sbjct: 501 gtgaaagggcataagaggcacaggaagcatgggagtggacaatggtgcttctgtcctccc 560

                                                      
Query: 361 tatggcctaagcattcctaaggcatgaacgaagccatctgggg 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggcctaagcattcctaaggcatgaacgaagccatctgggg 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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