ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTTTAGTCCAGGAAACAGGATTCTTAAATGCTTATTAGAAAAA
GTTCTGTCCCAAGGAGATTTTTTTATCCATGCAAAGTCCCTAAAATGAAT
TTTTAGAATTAGAAATCATCTTTAATTAAACATGGTATGGATAAAGCTAT
CATGCAGCAATTCATTAACCTGATTTTTTCATAGCTTCAAGAATAGGAGA
AGGAATAAAAAATGGACACAATACAACATCTAAATTAACAAAATGTGATA
TCTGTGTATTGGCTTCTAGGTTGCTAATTTTTCCACAGCAGACTGATGCT
CATTACCCATTAGTTTGTCAGTAAGAAAGCCAAATATTTACATATCCTAT
TGTTTTAGATATATCCTCAAGTAAACAAACATTTTTACATTTAGAGTCTG
CGTGCTTTGAAACTCCATCAAATACCACCCAAAGTCTGCTAGCTGTAGAT
AAGCTTCCGGACTGTACAAACCCTCTGTGCTGTTGGTGCTCTTTACAGCT
CTCAAACCCAGACTCCACACTGGGCGGCTGGGCTGCCATCACTCACATAT
CCATCCTCTTCAATTGCATCTTTCCGGAGATTTCCTCTTCTGAGTGATGA
TGATACCCCATTCTCTAAGTAAGTCATATTGTAAGTCCACAAGCAAACTG
ATATTCTG

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAAGGCACAACTTACCCA
AATTTATGGGACACAATGGAAGCAGTGCTAAGAGGAAAGTTCAAAATATT
ATGAGCCTCCATAAAGAAATTAGAAAGTTCCATACCAGCAATTTAAAAGT
ACACCTGGAAAGCTGTAGGAAAAAAAAAAGAAGCAAGGACACATAACAGA
GTAGAGGGTAGGAAATAATAAAAATCAGGGCTGAAATCAATCTGTTAGAA
ACAAATAAAACAGTACAAAGAATCAACAAAACCAAGAGCTGGTTCTTTGA
GAAAATTAGCAAGTTAGACAAACCTTTAGCCAAACTAACCAAAAGACAGA
GAGACAATACCTGAATAAACAAAACCAGAAATGCAAGTGGAGATCTAACA
AGAGACACTGAACAAATTCAAAGAATCATGAGATCTTGCTTCAATAACCT
GTATTCATCCAAAAGGGAAAACCTTAATGAAATGGATGATTGTCTAGACA
GATATCACATATCAAAGTTAAATCAAGATCAGCTAAACTATTTAAACAGC
CCTATAACCCTTAAAGAATTAGAAGCAGTCATCAAAAGTCTCTCAACCAA
AAAGCCCAGGGCCATATGGTTTTAGTGCACAATTCTATATGACATTCAAA
GAAGAGCTAATTCTAACACTCCTCAAACTATTTCACAAAATAGAAA

Query= MSMg01no147_b05.b1 MSMg01no147_b05.b1 CHROMAT_FILE:
MSMg01no147_b05.b1 PHD_FILE: MSMg01no147_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:34 2005
         (663 letters)



>mm_chrX_4668821_4669884
          Length = 1064

 Score = 1164 bits (602), Expect = 0.0
 Identities = 647/662 (97%), Gaps = 5/662 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattttagtccaggaaacaggattcttaaatgcttattagaaaaagttctgtcc 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattttagtccaggaaacaggatacttaaatgcttattagaaaaagttctgtcc 264

                                                                       
Query: 65  caaggagatttttttatccatgcaaagtccctaaaatgaatttttagaattagaaatcat 124
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 caaggagaattttttatccatgcaacgtccctaaaatgaatttttagaattagaaatcat 324

                                                                       
Query: 125 ctttaattaaacatggtatggataaagctatcatgcagcaattcattaacctgatttttt 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 ctttaattaaacatggtatggataaagccatcatgcagcaattcattaacctgatttttt 384

                                                                       
Query: 185 catagcttcaagaataggagaaggaataaaa-aatggacacaatacaacatctaaattaa 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 catagcttcaagaataggagaaggaataaaataatggacacaatacaacatctaaattaa 444

                                                                       
Query: 244 caaaatgtgatatctgtgtattggcttctaggttgctaatttttccacagcagactgatg 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaatgtgatatctgtgcattggcttctaggttgctaatttttccacagcagactgatg 504

                                                                       
Query: 304 ctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcattacccattagtttgtcagtaagaaagccaaatatttacatatcctattgttttag 564

                                                                       
Query: 364 atatatcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactccat 423
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatagcctcaagtaaacaaacatttttacatttagagtctgcgtgctttgaaactccat 624

                                                                       
Query: 424 caaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctctgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaataccacccaaagtctgctagctgtagataagcttccggactgtacaaaccctctgt 684

                                                                       
Query: 484 gctgttggtgctctttacagctctcaaacccag-act-ccacactgggcggctg-ggctg 540
           ||||||||||||||||||||||||||||||||| | | || ||||||||||||| |||||
Sbjct: 685 gctgttggtgctctttacagctctcaaacccaggatttcc-cactgggcggctgtggctg 743

                                                                       
Query: 541 ccatcactcacatatccatcctcttcaattgcatctttccggagatttcctcttctgagt 600
           |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct: 744 ccatcactcacatatccatcctcttcaactgcatccttccagagatttcctcttctgagt 803

                                                                       
Query: 601 gatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgatatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gatgatgataccccattctctaagtaagtcatattgtaagtccacaagcaaactgatatt 863

             
Query: 661 ct 662
           ||
Sbjct: 864 ct 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space:   688262
Effective search space used:   688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)