Query= MSMg01no147_k24.b1 MSMg01no147_k24.b1 CHROMAT_FILE:
MSMg01no147_k24.b1 PHD_FILE: MSMg01no147_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:20 2005
(637 letters)
>mm_chrX_90254849_90255886
Length = 1038
Score = 1170 bits (605), Expect = 0.0
Identities = 631/645 (97%), Gaps = 9/645 (1%)
Strand = Plus / Plus
Query: 2 ggaattctctttacc-agatatactctgtccattctttcttccaagaccttgactcaaat 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctctttacccagatatactctgtccattctttcttccaagaccttgactcaaat 261
Query: 61 gtcatcttcccaataaaatcttccctaaataggttattttaattctttttaaagtaataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtcatcttcccaataaaatcttccctaaataggttattttaattctttttaaagtaataa 321
Query: 121 tcaaataatctcactttgtcttcaactattctacttcaagtattatatttgttttattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcaaataatctcactttgtcttcaactattctacttcaagtattatatttgttttattga 381
Query: 181 ttcagaaagtaatatttaaatggtttaaataatttgctcacaatcacatctagggaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttcagaaagtaatatttaaatggtttaaataatttgctcacaatcacatctagggaatat 441
Query: 241 ggaaaccaagatttaaacatacacacactttctttttttagatttatttatttatttatt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 442 ggaaaccaagatttaaacatacacacactttctttttttaaatttatttatttatttatt 501
Query: 301 --------attagatattttctttatatacatttaaaatgctatcccgaaagttccctat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tatttattattagatattttctttatatacatttaaaatgctatcccgaaagttccctat 561
Query: 353 accctccctctgccctgctcccctacccacccactcccacttcttggccctggcattccc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 accctccctctgccctgctcccctacccacccactcccacttcttggccctggcattccc 621
Query: 413 ctgtattggggcatataaagtttgcaataccaaggggccactcttccccatgatggccga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctgtattggggcatataaagtttgcaataccaaggggccactcttccccatgatggccga 681
Query: 473 ctaggccatcttctgctacatatgcagctagagatatgagctctgggggtactggntagn 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 682 ctaggccatcttctgctacatatgcagctagagatatgagctctgggggtactggttagt 741
Query: 533 tcatattgttgttccatctatagggttgcagaccccttcagctccttgggtgctttctct 592
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcatattgttgttccacctatagagttgcagaccccttcagctccttgggtgctttctct 801
Query: 593 agcttctccattgggggccctatgttccatcttatagatgactga 637
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 agcttctccattgggggccctatgttccatcttatagatgactga 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space: 644556
Effective search space used: 644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_k24.g1 MSMg01no147_k24.g1 CHROMAT_FILE:
MSMg01no147_k24.g1 PHD_FILE: MSMg01no147_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:20 2005
(546 letters)
>mm_chrX_90329055_90330000
Length = 946
Score = 862 bits (446), Expect = 0.0
Identities = 446/446 (100%)
Strand = Plus / Minus
Query: 1 ttgcactgtgctttgagaccctctagtttacagttgggggcagatttgaatttgtttact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttgcactgtgctttgagaccctctagtttacagttgggggcagatttgaatttgtttact 387
Query: 61 aattgaacataaaaattacagtgagacagagaattaaaattcagagaagtataactgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aattgaacataaaaattacagtgagacagagaattaaaattcagagaagtataactgtat 327
Query: 121 tactgttaaaatatataaatgtagatagagggggtccaccttcttcataatagaggtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tactgttaaaatatataaatgtagatagagggggtccaccttcttcataatagaggtggg 267
Query: 181 ttggatagaattataaatgtgggtacttatagagtgatgtaaatgattttcccctccctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttggatagaattataaatgtgggtacttatagagtgatgtaaatgattttcccctccctt 207
Query: 241 gctgtgtttgtttggtttttgaggcagggtatcatgtattcaaggctggcctcaaatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gctgtgtttgtttggtttttgaggcagggtatcatgtattcaaggctggcctcaaatttt 147
Query: 301 ctatgcagccaaggagagccttgaacttctgatgctcttgcttttacctcctgagagttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctatgcagccaaggagagccttgaacttctgatgctcttgcttttacctcctgagagttt 87
Query: 361 agatagcaggcatgtactactttatgtagaattgagaattatactcagggctttgtgtat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 agatagcaggcatgtactactttatgtagaattgagaattatactcagggctttgtgtat 27
Query: 421 gctaggcaggtcctctaccaaccatg 446
||||||||||||||||||||||||||
Sbjct: 26 gctaggcaggtcctctaccaaccatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
