BAC Information

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BAC

Clone NameMSMg01-148L24
ChromosomeX (Build37)
Map Location 70,162,348 - 70,162,692
singlet/doubletsinglet
Overlap geneCetn2
Upstream geneGm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10, Gabra3, Gabrq, Magea9
Downstream geneNsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148L24.T7 (MSMg01no148_l24.b1)MSMg01-148L24.TJ (MSMg01no148_l24.g1)
ACCAG351656AG351657
length721724
length of high quality
(start - end)
489 (72 - 560)345 (75 - 419)
definitionCHROMAT_FILE: MSMg01no148_l24.b1 PHD_FILE: MSMg01no148_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:45 2005CHROMAT_FILE: MSMg01no148_l24.g1 PHD_FILE: MSMg01no148_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATACGCGGAAT
TCCTCCAGACTGTTTCCGGACTTCCCTGCTGGGATCATTTTACTGTCTAA
AGTTTGCATTATCTAGAAGAACTTCCCCCTTTGTGCAAACTACCTGTAAC
CCTGTGGGCCTTTAGTATTATTTCTTTAATAATCATTAATAATCATAATA
TAATGTATTATTACCAGCTTTGAATGTCTCCTACTTGAAATATTCTGCCT
ATCTTTACCATATATGGATACTGTCCATAGTGTTTCTCCAGTGTTGAATT
CTATTTTATTTCTCTTTCTCTCTGTCTCTGTCTTTGTCTCTCTGTTTATC
TCTCGCTGTGTGTGTATGGTGTGTGTGTATAAATATTCCTTTTGTGTGTG
GTACTTATGTATATGCCTCCACGCGTATAGGCACAGCTGTGTGTGTGTGT
GTGATTGCACACATGTACCTTTGCATGTAGGGGCCAGAGATACTTCTGAT
ATCTGGTTTATTTTATGAAACAGACTCTCTCTCTCCCCCTCCCCCTCTCC
CTACCCTCTCTCTCCCTCTCTTTCTCTCTGAACATGCTGCTCATCCCCTG
CCCTAGGGTGCTAGATCATTGCCTTCTAGGGATCCATCATGCCTTGCCTC
CCATTACACTTGCGAATAAACTCACTGTTGTGCCGAGATTTCACCTTAAA
GTTTCACCCCGCTTATTTTAC
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCTAAACATGCTGCCAAGCTTGATAACCTAAGTGGG
AACCAGGACCCAGGCTTCAGTTGTCGTTGTCAAAGATGAAAAGGGAAACG
ATGCTTACATGGTAAAAGGAGAGAACTAACTCTTCCAAATTATTCTCTGA
CCGCCACACTCAGGCTAAAATGTGCTTCTCCACCAAGGAATAATAAGTGT
AAAAACTAAAATAAAATTAACCCCAACTCTAAATGACAAATAGCACAAAC
CTCTGTGAAGAAAAAACTTTCTCTCATCTTAAAACTATTTCAATTTATAT
ATGTCAGTTTTTACTAAGTTATAAAAAAAGAAATTGGCCATAATGAGGTT
ATTTTCTAATATAACTGTAAACCTGTCTTAATGTGATGTCTCATATGACT
AAATTCAACTATATTTCATTGGGGAGCCACCAAATAGAAGAGAGTTTTTG
TTTTAAAATAGTATATTACCATTTTCCTCCTTGGTCTTGTATAGATCAAC
ATAGAGCAAGTGAATATATGAATATGAATTTCTAGTGTTAACATAGCCTT
CATGAGAAGACATAACTCTGACCTCTCCTGTCTTTAAAGTTTATACTACA
GAAAGTTTATGCAATTGTACCATTAATCCACGCGTCCCTTAAGGAAAATC
CATTTCAAGTCCTTTTTAAATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_l24.g1 MSMg01no148_l24.g1 CHROMAT_FILE:
MSMg01no148_l24.g1 PHD_FILE: MSMg01no148_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:45 2005
         (345 letters)



>mm_chrX_70162148_70162892
          Length = 745

 Score =  652 bits (337), Expect = 0.0
 Identities = 343/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccaagcttgataacctaagtgggaaccaggacccaggcttcagttgtcgttgtcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccaagcttgataacctaagtgggaaccaggacccaggcttcagttgtcgttgtcaaa 260

                                                                       
Query: 61  gatgaaaagggaaacgatgcttacatggtaaaaggagagaactaactcttccaaattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgaaaagggaaacgatgcttacatggtaaaaggagagaactaactcttccaaattatt 320

                                                                       
Query: 121 ctctgaccgccacactcaggctaaaatgtgcttctccaccaaggaataataagtgtaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgaccgccacactcaggctaaaatgtgcttctccaccaaggaataataagtgtaaaa 380

                                                                       
Query: 181 actaaaataaaattaaccccaactctaaatgacaaatagcacaaacctctgtgaagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaaaataaaattaaccccaactctaaatgacaaatagcacaaacctctgtgaagaaaa 440

                                                                       
Query: 241 aactttctctcatcttaaaactatttcaatttatatatgtcagtttttactaagttataa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactttctctcaacttaaaactatttcaatttatatatgtcagtttttactaagttataa 500

                                                        
Query: 301 aaaaagaaattggccataatgaggttattttctaatataactgta 345
           |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 aaaaagaaattggcaataatgaggttattttctaatataactgta 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)