Query= MSMg01no149_j16.b1 MSMg01no149_j16.b1 CHROMAT_FILE:
MSMg01no149_j16.b1 PHD_FILE: MSMg01no149_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:56 2005
(618 letters)
>mm_chrX_92826640_92827658
Length = 1019
Score = 665 bits (344), Expect = 0.0
Identities = 370/380 (97%), Gaps = 7/380 (1%)
Strand = Plus / Minus
Query: 243 gggcacaggggaaaaattcctgaatagaacagcaatggcttgtgctgtaagatcgagaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 gggcacaggggaaaaattcctgaatagaacagcaatggcttgtgctgtaagatcgagaat 960
Query: 303 tgacaaatgggacctcatgaaactgcaaagcttctgtaaggcaaaaggca-tcgtcaata 361
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 959 tgacaaatgggacctcatgaaactgcaaagcttctgtaaggcaaaaggcact-gtcaata 901
Query: 362 agacaaaaaggccaccaacagattgggaaaggatctttacctatcctaaatcagataggg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 agacaaaaaggccaccaacagattgggaaaggatctttacctatcctaaatcagataggg 841
Query: 422 tctaatatccaatatatacaactgtgtcttaagtgagtctcagaggacttgaactgagtg 481
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 840 tctaatatccaatatatacaactgtgtcttaagtgagtctcagaggacttggactgagtg 781
Query: 482 aaaagactgatgttgggttacaaagtcaagtgttcccctgtgtaacaatttttt-aaccc 540
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 780 aaaggactgatgttgggttacaaagtcaagtgttcccctgtgtaacaatttttttaaccc 721
Query: 541 cacagttacagtaacaagagagttccctaaatcccaggagtatagaagggg--gggggta 598
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct: 720 cacagttacagtaacaagagagttccctaaatcccaggagtatgg--ggggaggggggta 663
Query: 599 actgagcttgcaatggatag 618
||||||||||||||||||||
Sbjct: 662 actgagcttgcaatggatag 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space: 613472
Effective search space used: 613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_j16.g1 MSMg01no149_j16.g1 CHROMAT_FILE:
MSMg01no149_j16.g1 PHD_FILE: MSMg01no149_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:56 2005
(641 letters)
>mm_chrX_92771807_92772847
Length = 1041
Score = 1214 bits (628), Expect = 0.0
Identities = 637/640 (99%)
Strand = Plus / Plus
Query: 1 caatgccacagtccagggaaaggtcaaatgaagaaaaatataggactcactaacttagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgccacagtccagggaaaggtcaaatgaagaaaaatataggactcactaacttagaa 260
Query: 61 tggccagtgtcaatattttgtacttatgtgagttcacaagtgaggcttaaaaaactttca 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tggccagtgtcaatattttgtacttatgtgaattcacaagtgaggcttaaaaaactttca 320
Query: 121 ttgaattatacagtgagaaagaatagaggctaaatgataaatatatgtgcggagagtcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaattatacagtgagaaagaatagaggctaaatgataaatatatgtgcggagagtcct 380
Query: 181 ctccttagagcttcaggtgtgaggtgtgcctttctcttgaaatctgctgtcccagaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ctccttagagcttcaggtgtgaggtgtgcctttctcttgaaatctgctgtcccagaaaga 440
Query: 241 tgtggtgcattatgtatgtatgacacttgtcagaaaggagatataatgaaattccttcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggtgcattatgtatgtatgacacttgtcagaaaggagatataatgaaattccttcaa 500
Query: 301 agataaactaccatgctagactgtcaattggggacccacaacactgttaatttttctatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agataaactaccatgctagactgtcaattggggacccacaacactgttaatttttctatt 560
Query: 361 ctcattaaaggacacctaatgcaaaacaaggatggcaggttggaatatgtatcagtggcg 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 ctcattaaaggacacctaatgcaaaacaagggtggcaggttggaatatgtatcagtggcg 620
Query: 421 gggagcccagatcaagggattgtgctattctttggaggggttactattactcataaagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggagcccagatcaagggattgtgctattctttggaggggttactattactcataaagtc 680
Query: 481 atgtcttcttaccctggtagtcccatctatacactaaactatatgatcatgttacaagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtcttcttaccctggtagtcccatctatacactaaactatatgatcatgttacaagtt 740
Query: 541 ggtactgaaatcatagccaatagacctgcaagggcccttactatcttagctaaacaataa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtactgaaatcatagccaatagacctgcaagggcccttactatcttagctaaacaataa 800
Query: 601 caacaacaaagtgtgcaataccaattgacaaaattgttta 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caacaacaaagtgtgcaataccaattgacaaaattgttta 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
