BAC Information

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BAC

Clone NameMSMg01-150B02
ChromosomeX (Build37)
Map Location 56,087,444 - 56,087,949
singlet/doubletsinglet
Overlap genenone
Upstream geneZic3, LOC631581, LOC631621
Downstream gene4930550L24Rik, Fgf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150B02.T7 (MSMg01no150_b02.b1)MSMg01-150B02.TJ (MSMg01no150_b02.g1)
ACCAG352610AG352611
length792725
length of high quality
(start - end)
203 (46 - 248)508 (76 - 583)
definitionCHROMAT_FILE: MSMg01no150_b02.b1 PHD_FILE: MSMg01no150_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:32 2005CHROMAT_FILE: MSMg01no150_b02.g1 PHD_FILE: MSMg01no150_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACAGAGATAGCTATGATAAAGTCTGAGTTTGAGAAAGGGCCTTC
TTCTCTTACTCTCCATCCCCTGTTCCCCCTCTCTCCACATGGCCATGACC
AGCCTCTGATTCTCTTCTCTCTCTCTTTCTCTGCCTTTTTACAATAAATG
CTTTAAAACCAAGAGAGAGAGAGAGGGAGAGGGGGAGGGGGAGAGGNACC
CCTCCCCCTCTTTCCCCCCCCACCTCCTTCCCCTAATCCCCTTCCCCTTT
AATTCAATTACACTACCAAACGTTTTTTTTCCCCATAGAACACGAAACGG
GGGAAAGAAATGGGTAAAATGGTAACAAGGGAAACGGGCAATGTACACCC
CAAAAAAACGTAAAAATGGGACCCACGCAACAAGAAATTGGCCGCCGGCC
CTTAGTCCAAACATACAATGGGAAATATAAAAAAAAAACAAGGGGGGTTA
TATAAAACATTCAAAATTGCGGGCCCAAAATACGTTCAAAGATCCCCACA
AGAACCTGGTTCACTGGACAAATGAAATAACACTTACAGAGGGACAAAAA
AGACAAATGGGGCCAAAAATGGGCACAAATGGGTTAAAGTACAAGCCAAA
GCGTGCGCCGCCCGCACATCGACCGTTGGGCAAATTACGCGATAAAAGCG
AGAAAACAGGGAAAACGCAATGAAACAAACGAGTGTTTAATGGATTTTTC
TCCCACAACAACATTCAAATAGTTTCACGAAACAACAGATAG
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATGACAACCTCATTAACC
TTAATTATGGACCCTCAAGATCCAGCATGGTACTTGTGGGCTATGGTCTT
TGTGAATTACAGACTGATTACCTGAAACAAATAAAAACAGGTAGAAAGAG
ATAGTTAATTAGCAATTAAATTCTGTAATTTATTAAATAGCATTTAATAC
ATTCTATGAAATCACAGTTAATCAAAAACATACTAGCTTCATTGAAAAAG
AAAAAACATGACAGGCACCCTTGTTGGAGGTAAACATGAATACAGTCTAT
GAAAAAATTGCCATATAATTTTGTCACTGGTAAAATCCTCACATACCCCA
TAATGTCCTTAGTTTTCATTCTCAGTGAATTTCAGAGAATCTAATTTAAA
AAGAAAGAGCACATGGGTAATTCTGTCCATTCTCAATCACCTTTATTTTT
CTAATTCATTTTTTTAACTAGGCAACTATCTGAATTTATGTATATGAGAA
GTAAACATTGGTAAAACAGTGAACTCATCTTAGAGAGCANACATACTTAA
AAATTTCTTATCAGTGTGAGCCAAAACATTTGTGCTACTTTCACATCTCT
GAACCTAGTTTGTCATGCTGGTTATTACTATAGATTGGTACTTGGCATGG
CTCACAGCTGGCCAAGACTGTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_b02.g1 MSMg01no150_b02.g1 CHROMAT_FILE:
MSMg01no150_b02.g1 PHD_FILE: MSMg01no150_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:32 2005
         (508 letters)



>mm_chrX_56087244_56088152
          Length = 909

 Score =  932 bits (482), Expect = 0.0
 Identities = 500/506 (98%), Gaps = 1/506 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagagatgacaacctcattaaccttaattatggaccctcaagatccagcatggtactt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcaaagatgacaacctcattaaccttaattatggaccctcaagatccagcatggtactt 260

                                                                       
Query: 61  gtgggctatggtctttgtgaattacagactgattacctgaaacaaataaaaacaggtaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gtgggctatggtctttgtgaattacagactgattacctgaaacaaataaaaacaggcaga 320

                                                                       
Query: 121 aagagatagttaattagcaattaaattctgtaatttattaaatagcatttaatacattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagatagttaattagcaattaaattctgtaatttattaaatagcatttaatacattct 380

                                                                       
Query: 181 atgaaatcacagttaatcaaaaacatactagcttcattgaaaaagaaaaaacatgacagg 240
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 381 atgaaatcacagttaatcaaaaacatactagcttcatttaaaaagaaacaacatgacagg 440

                                                                       
Query: 241 cacccttgttggaggtaaacatgaatacagtctatgaaaaaa-ttgccatataattttgt 299
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 441 cacccttgttggaggtaaacatgaatacaatctatgaaaaaaattgccatataattttgt 500

                                                                       
Query: 300 cactggtaaaatcctcacataccccataatgtccttagttttcattctcagtgaatttca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactggtaaaatcctcacataccccataatgtccttagttttcattctcagtgaatttca 560

                                                                       
Query: 360 gagaatctaatttaaaaagaaagagcacatgggtaattctgtccattctcaatcaccttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaatctaatttaaaaagaaagagcacatgggtaattctgtccattctcaatcaccttt 620

                                                                       
Query: 420 atttttctaattcatttttttaactaggcaactatctgaatttatgtatatgagaagtaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttttctaattcatttttttaactaggcaactatctgaatttatgtatatgagaagtaa 680

                                     
Query: 480 acattggtaaaacagtgaactcatct 505
           ||||||||||||||||||||||||||
Sbjct: 681 acattggtaaaacagtgaactcatct 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space:   447702
Effective search space used:   447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)