BAC Information

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BAC

Clone NameMSMg01-150M05
ChromosomeX (Build37)
Map Location 158,531,782 - 158,693,622
singlet/doubletdoublet
Overlap geneNhs
Upstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150M05.T7 (MSMg01no150_m05.b1)MSMg01-150M05.TJ (MSMg01no150_m05.g1)
ACCAG353113AG353114
length739731
length of high quality
(start - end)
251 (66 - 316)501 (77 - 577)
definitionCHROMAT_FILE: MSMg01no150_m05.b1 PHD_FILE: MSMg01no150_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:24 2005CHROMAT_FILE: MSMg01no150_m05.g1 PHD_FILE: MSMg01no150_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,693,374 - 158,693,622)(158,531,782 - 158,532,282)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGTTTTTGCCAAAGAGTCCTTGTTAGTGTTAGAGGATCCTGGCTAAGAGG
AAGGAGGTAGAAGGGAAGTGAGCAGAGGATAGAAACATGCATCCCAGCAG
TAGAAAATACCAGAGCAGAAAAGTCTTTTGAAATCCCCTAGCCAGATATT
TCCAGCCTTTCTCAGGACTGAGGGCCCAGATAAGATAGCACTTTACTGAG
CCCACAGATAAGGCTTGTCAAACACATAACTCTACCAACATTTTCCAGCA
ATCACACAAGCTCTTCTGTCTGTCTGTGGCTCATAGGTTGGAAACCACTA
GCAGAAGCATGGGTAGGTTTAATTTGGAAAGGAAACTCTATTAATTTGAC
AGTGGTGGGCATGCCCCCCGTCCATATTGATATCGATTCTCAGGATACGA
CTAGCTCGCCACGCAAAGACCGCTCGTGGGTGATGTTGACCAGCTACCCC
GGTCTGCAAAGACACTTTGAATGTTTCTCAGCATTTGACCCGACGTTCTG
CCCTCTCCCATGTTCATTTCCCCCCCTGCCCTATTTTGCACCCTTGCGGC
TCCCTTGACCTCCCCTCTGTTTTCCCCCCCCTTCTCCCCCTTTTTTCCCC
CCCGCTTTTTTTTTTTCTCCCCCCCCTTTCCCCTTGCCCCTCCCTTCTCC
CCCCTTTCTTTCTCCCTCCTCCCCTCCCCCCCGTTCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGATGGAATGAACACCTGTAT
GAAAGGACTCAGAATTATAACTGGTATATAACAGACATCCATTAAAGGTT
TGGATTTTTGCAGTTCATATATGAGTGTTTTTAGGGTCTGGGGATGTAGC
TCACTGGAGTGTGTACTTGCCTAGCATGTACTGTTTTCCAAGTATGCACT
GGTTGCCAGCCAGCACTGCGTAAGCCATGCACTGCGCCACCCACTTATGA
TCCTAGCATTAAGAAGGCAGGCAAAAAGATTCAGGAACAAGAAGTTCAAG
GTCATTCTTGGCTGTACAACAAGTTCAAGACAAGCTTTAGCTATAGAGAA
TTCAAGATCAGTCTGGCCTACATTTAGACAACCCCATCTCAAAAACAAAA
AGGTTTTAATTGTGCTTGCCCAGCAAGGTGGAGGTAGTGGTGGTAGAAAA
TAGGAATTAGATAAGGAACTTTAGACAATCACCTCTCTGGAAAATCAATT
TTATTTAGATAGTGGATAGATAAGAGCCTCAGACTCTGGAATCAGCATTT
TGATGCTGGCCAAGTGACTTCTTTGTCCCTGTGCCAGATAATTTGTCTAT
AACAGGCAATAGCAACGCTAGCTTTCCGAGTTAGTAAGGATTAAATGAAC
TAATGCCTGGAAAAGGGTTACAGCCGCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_m05.b1 MSMg01no150_m05.b1 CHROMAT_FILE:
MSMg01no150_m05.b1 PHD_FILE: MSMg01no150_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:24 2005
         (251 letters)



>mm_chrX_158693174_158693824
          Length = 651

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccttgttagtgttagaggatcctggctaagaggaaggaggtagaagggaagtgagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtccttgttagtgttagaggatcctggctaagaggaaggaggtagaagggaagtgagcag 390

                                                                       
Query: 61  aggatagaaacatgcatcccagcagtagaaaataccagagcagaaaagtcttttgaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aggatagaaacatgcatcccagcagtagaaaataccagagcagaaaagtcttttgaaatc 330

                                                                       
Query: 121 ccctagccagatatttccagcctttctcaggactgagggcccagataagatagcacttta 180
           |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 329 ccctagccagatatttccagcctttctcaggaatgagggtccagataagatagcacttta 270

                                                                       
Query: 181 ctgagcccacagataaggcttgtcaaacacataactctaccaacattttccagcaatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgagcccacagataaggcttgtcaaacacataactctaccaacattttccagcaatcac 210

                    
Query: 241 acaagctct 249
           |||||||||
Sbjct: 209 acaagctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no150_m05.g1 MSMg01no150_m05.g1 CHROMAT_FILE:
MSMg01no150_m05.g1 PHD_FILE: MSMg01no150_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:24 2005
         (501 letters)



>mm_chrX_158531582_158532482
          Length = 901

 Score =  922 bits (477), Expect = 0.0
 Identities = 495/501 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagatggaatgaacacctgtatgaaaggactcagaattataactggtatataacagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagatggaatgaacacctgtatgaaaggactcagaattataactggtatataacagac 260

                                                                       
Query: 61  atccattaaaggtttggatttttgcagttcatatatgagtgtttttagggtctggggatg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccattaaaggtttggagttttgcagttcatatatgagtgtttttagggtctggggatg 320

                                                                       
Query: 121 tagctcactggagtgtgtacttgcctagcatgtactgttttccaagtatgcactggttgc 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tagctcactggagtgtgtacttgcttagcatgtactgttttccaagtatgcactggttgc 380

                                                                       
Query: 181 cagccagcactgcgtaagccatgcactgcgccacccacttatgatcctagcattaagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagccagcactgcgtaagccatgcactgcgccacccacttatgatcctagcattaagaag 440

                                                                       
Query: 241 gcaggcaaaaagattcaggaacaagaagttcaaggtcattcttggctgtacaacaagttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaggcaaaaagattcaggaacaagaagttcaaggtcattcttggctgtacaacaagttc 500

                                                                       
Query: 301 aagacaagctttagctatagagaattcaagatcagtctggcctacatttagacaacccca 360
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 501 aagacaagctttagctatagagaattcaagatcagtctgggttacatttagacaacccca 560

                                                                       
Query: 361 tctcaaaaacaaaaaggttttaattgtgcttgcccagcaaggtggaggtagtggtggtag 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 tctcaaaaacaaaaaggttttaattgtgcttgcccagaaaggtggaggtagtggtggtag 620

                                                                       
Query: 421 aaaataggaattagataaggaactttagacaatcacctctctggaaaatcaattttattt 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 aaaataggaattagataaggaactttagacaatcacctccctggaaaatcaattttattt 680

                                
Query: 481 agatagtggatagataagagc 501
           |||||||||||||||||||||
Sbjct: 681 agatagtggatagataagagc 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)