BAC Information

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BAC

Clone NameMSMg01-151H20
ChromosomeX (Build37)
Map Location 17,218,502 - 17,368,652
singlet/doubletdoublet
Overlap geneEG668994
Upstream geneMaoa, Maob, Ndph, LOC100043063, Efhc2, Fundc1, EG278181
Downstream geneEG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik, LOC100043098
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151H20.T7 (MSMg01no151_h20.b1)MSMg01-151H20.TJ (MSMg01no151_h20.g1)
ACCAG353639AG353640
length758734
length of high quality
(start - end)		373 (45 - 417)344 (75 - 418)
definitionCHROMAT_FILE: MSMg01no151_h20.b1 PHD_FILE: MSMg01no151_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:18 2005CHROMAT_FILE: MSMg01no151_h20.g1 PHD_FILE: MSMg01no151_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,368,283 - 17,368,652)(17,218,502 - 17,218,610)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGTAAAATGGCCCTCTGAAGTGTTTATATCCTCATCTTAGATCCTCT
GACTGTGATATCGCTCCCCTAAATTATTTTATACTACTCAGATAAGCTTA
AGATGGGGAAATTATTGCAATAATCCTAACCCAACCAAGAGAGTCTTTTT
TAAATGGAAATTTATGATTGGTGGCAAAAGAGGAAGTCAAAGAGACCTAA
GAACAAGAATGATTTGCTGAATTGATGCTTGATTATAAGATGAGAGAAAG
TGAGTTATTAAAAGGGGAATATAAGTAGCCTATAGAAAGAGAAATTAACC
TTTATTCCATAAAGGCAAACATCCATATGTAAGATCTTTCATACACAAAT
CCTAGCCTTTAATTTTTAACCCCACGCATCACATTTGGCATGCCTGTGGA
AACCAGGAAGCTAGAAAATCTCCATAGTAGTGGAAAGAAACCTTAGTTGG
GTGGAAAGGGTGTGTGTTGTATAAAGGATGTGTTCTGACCCCATTTTTAC
CCTACTATTTCCTGTATTGGTTCTATTATCTTTTACGCTCACGTTTAAGA
TGATCTACTTACGGTCAACCTTCTTCCTGTCATCAACCTTATACCCTTAG
TTTCCCCTTTTTCTCCAATATATTATCCTACCATAATTGTTATTCTTATT
CCTCCCCCTTTTTCCTCTTTCTATAACTAAAATCCACACTTCCCTCTATA
TCTCTATT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGTGCTCATCCTATGTGGCAAGTGT
TTTACTGATTGGGCATTTTCCTCAGTCTTTTATTGATGTTTTCAAAATTA
AAAAGTAATAACTATTTAGTAGTTTAAAATTTCAAAGTTAGATGATGTGT
TGAGTGTAACAAGTGACTTATCTACTTATTTAATAATAGCTTTTAAAATA
AGATCTATAATTAGGGGTGTGATTCAGCGGTATACCGTTTGTCTAAAATG
TGTGAGGCCCTCCATTTGCCTCAAAGCTGAAGAAAGAAAAAATATAAATA
TGATTTTACAGTACATAGTATCATACAATTTGTGATTATGTTGTATGATA
GCTCCTTTTTTTTGAACCCCACCTCTATAGGATCCAGAATGTTGTTAACT
TTAGCAATTTAAACTTGAATATAATCAATGAATTTGATATAATTTGGGCT
GCAGACACTAACTTCTGACCTGCCATATAAATACTCAGAATTAACCCTGC
AATACAGGTAAACATTTAACTCTGAGGTTCTAAGTTGTAGGAATACATAC
TAAGAGTCTCTCCTCTTGGAATGCATAAGGAGCTGTTTGACCTTCTCATT
GNAAATTATTGCATTTGAAATTTGTTTTTTTAACTTATCTTCCTTTTTTT
CATATCCCCAATATTATTCTTTTCTTATTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_h20.b1 MSMg01no151_h20.b1 CHROMAT_FILE:
MSMg01no151_h20.b1 PHD_FILE: MSMg01no151_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:18 2005
         (373 letters)



>mm_chrX_17368080_17368852
          Length = 773

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcgtaaaatggccctctgaagtgtttatatcctcatcttagatcctctgactgtg 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ggaattcgtaaaatgggtctctgaagtgtttatatcctcatcttagatcctctgactgtg 514

                                                                       
Query: 64  atatcgctcccctaaattattttatactactcagataagcttaagatggggaaattattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atatcgctcccctaaattattttatactactcagataagcttaagatggggaaattattg 454

                                                                       
Query: 124 caataatcctaacccaaccaagagagtcttttttaaatggaaatttatgattggtggcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 caataatcctaacccaaccaagagagtcttttttaaatggaaatttatgattggtggcaa 394

                                                                       
Query: 184 aagaggaagtcaaagagacctaagaacaagaatgatttgctgaattgatgcttgattata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagaggaagtcaaagagacctaagaacaagaatgatttgctgaattgatgcttgattata 334

                                                                       
Query: 244 agatgagagaaagtgagttattaaaaggggaatataagtagcctatagaaagagaaatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agatgagagaaagtgagttattaaaaggggaatataagtagcctatagaaagagaaatta 274

                                                                       
Query: 304 acctttattccataaaggcaaacatccatatgtaagatctttcatacacaaatcctagcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acctttattccataaaggcaaacatccatatgtaagatctttcatacacaaatcctagcc 214

                     
Query: 364 tttaattttt 373
           ||||||||||
Sbjct: 213 tttaattttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no151_h20.g1 MSMg01no151_h20.g1 CHROMAT_FILE:
MSMg01no151_h20.g1 PHD_FILE: MSMg01no151_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:18 2005
         (344 letters)



>mm_chrX_17218302_17219045
          Length = 744

 Score =  188 bits (97), Expect = 5e-52
 Identities = 106/109 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgctcatcctatgtggcaagtgttttactgattgggcattttcctcagtcttttatt 60
           |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 aggttctcatcctatgcggcaagtgttttacagattgggcattttcctcagtcttttatt 260

                                                            
Query: 61  gatgttttcaaaattaaaaagtaataactatttagtagtttaaaatttc 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgttttcaaaattaaaaagtaataactatttagtagtttaaaatttc 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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