BAC Information

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BAC

Clone NameMSMg01-151P03
ChromosomeX (Build37)
Map Location 159,463,385 - 159,463,929
singlet/doubletsinglet
Overlap geneCtps2
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151P03.T7 (MSMg01no151_p03.b1)MSMg01-151P03.TJ (MSMg01no151_p03.g1)
ACCAG353970AG353971
length723729
length of high quality
(start - end)
506 (47 - 552)547 (74 - 620)
definitionCHROMAT_FILE: MSMg01no151_p03.b1 PHD_FILE: MSMg01no151_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:54 2005CHROMAT_FILE: MSMg01no151_p03.g1 PHD_FILE: MSMg01no151_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTCCCAAGACTTTTATCATGAATGGGTGTTGGATTTTG
TCAAATGCTTTCTCCGCATCTAATGAGATGATCATGTGGTTTTTGTCTTT
GAATTTGTTTATATAATGGATTATGTTGATGGATTTCTGTATATTAAACT
ATCCCTGCATCCCTGGAATGAAACCTACTTGGTCAGGATGGATGATTGTT
TTGATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGTATTTTTGC
ATCGATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGT
CTTTCTGTGGTTTAGGTATCACAGAAATTGTGGCTTCATAGAATGAATTG
GGTAGAGTACCTTCTGCCCCCACTTTGTGGAATAGTTTGTGAAGAACTGG
AATTAGATCTTCTTTGAAGATCTAATAGAACTCTGCACTAAACCCATCTG
GTCCTGGGCTTTTTTGGTTGGGAGACTATTAATGATTGCTTCTATTTCTT
TACTAGATATAGAACTGTTTAGACCGTTAACCTGATCCTGATTTAACTTT
TGCTACCTGGTATCTGTCTAGAAACTTGTCCACTTCCTCCAGGCTTTCCA
GCTCCGTTGAATCAAGCCTTTTGCATAACGATCTGATGAAGCTCTCGTAC
CTCTTCTTGACTGCCTGTATCCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAATTTTATTGCTACCAGGTCAGCAG
GTGCTTGGCCAAAGTTAGGGATGGGTCAGGCATGGAAGGGTTCCTGGTAA
TGTAATTGCTATAGATGAGTGAGTTGACTTATAGTAAAGTTTGTTGACTT
GCTGGGTTATTTGAAACTGAATAAGGTAAGGAGAAACCCAAACAGAGCTC
ATGGCTAGGAGCAAAACGTCAATTGCAGAGCTAGCTCACAGAGATGATGT
ATGGATTTGTCTTTTTGAAAAAAACTATGCGTGACTGAAGGTAACCCAAA
CATCTCATATATTTCTTACCTTAAATTGATATATTATGCAGATTGTTTTT
CAAACCCCCAGACATGACCCAATGTGAAAATGGAGAGCGTCGATGATTCT
GACTATAAATCATAGTAATGATCCAAAGTGGTTAGGGTTTCAAGGTCAGT
TTCGAGAGTACTTTACCATGTCTGTGTGGACTGCTAGATGTTTCCTGGGT
CTTGAGATAGCGCGCTTGTCTTCTGCCTAATTAGTGCCAACTTCAATCTC
TGTGGAATAAGTTGGCAGATACGACCAGTTTTTTCACAGTGCGACTTCGG
TGATGTTAAGTGCTGATGTTAAGCGCAGTACCTGCATATTGGCAAAAACT
GTGCTCCTTAAACCCTGAATAGAACCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_p03.g1 MSMg01no151_p03.g1 CHROMAT_FILE:
MSMg01no151_p03.g1 PHD_FILE: MSMg01no151_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:54 2005
         (547 letters)



>mm_chrX_159463185_159464130
          Length = 946

 Score = 1025 bits (530), Expect = 0.0
 Identities = 542/548 (98%), Gaps = 5/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaattttattgctaccaggtcagcaggtgcttggccaaagttagggatgggtcaggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaattttattgctaccaggtcagcaggtgcttggccaaagttagggatgggtcaggcat 260

                                                                       
Query: 61  ggaagggttcctggtaatgtaattgctatagatgagtgagttgacttatagtaaagtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagggttcctggtaatgtaattgctatagatgagtgagttgacttatagtaaagtttg 320

                                                                       
Query: 121 ttgacttgctgggttatttgaaactgaataaggtaaggagaaacccaaacagagctcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgacttgctgggttatttgaaactgaataaggtaaggagaaacccaaacagagctcatg 380

                                                                       
Query: 181 gctaggagcaaaacgtcaattgcagagctagctcacagagatgatgtatggatttgtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaggagcaaaacgtcaattgcagagctagctcacagagatgatgtatggatttgtctt 440

                                                                       
Query: 241 tttgaaaaaaactatgcgtgactgaaggtaacccaaacatctcatatatttcttacctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgaaaaaaactatgcgtgactgaaggtaacccaaacatctcatatatttcttacctta 500

                                                                       
Query: 301 aattgatatattatgcagattgtttttcaaacccccagacatgaccc--aatgtgaaaat 358
           ||||||||||||||||||||||||||||||||||||||||||||     |||||||||||
Sbjct: 501 aattgatatattatgcagattgtttttcaaacccccagacatga---ggaatgtgaaaat 557

                                                                       
Query: 359 ggagagcgtcgatgattctgactataaatcatagtaatgatccaaagtggttagggtttc 418
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggaaagcgtcgatgattctgactataaatcatagtaatgatccaaagtggttagggtttc 617

                                                                       
Query: 419 aaggtcagtttcgagagtactttaccatgtctgtgtggactgctagatgtttcctgggtc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaggtcagtttcgagagtactttaccatgtctgtgtggactgctagatgtttcctgggtc 677

                                                                       
Query: 479 ttgagatagcgcgcttgtcttctgcctaattagtgccaacttcaatctctgtggaataag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttgagatagcgcgcttgtcttctgcctaattagtgccaacttcaatctctgtggaataag 737

                   
Query: 539 ttggcaga 546
           ||||||||
Sbjct: 738 ttggcaga 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 946
Length adjustment: 10
Effective length of query: 537
Effective length of database: 936
Effective search space:   502632
Effective search space used:   502632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)