MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-153B19
Chromosome	X (Build37)
Map Location	137,440,781 - 137,441,418
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446, EG245643, LOC666424, Prps1, Tsc22d3, Mid2, LOC619612, Tex13, LOC632685
Downstream gene	Vsig1, Psmd10, Atg4a, LOC100038961, Col4a6, Col4a5, Irs4, LOC633596, EG666488, LOC622901
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rbm41 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237073 MGI:2444923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm719 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:279706 MGI:2685565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 1 Protein

name	E230019M04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:331537 MGI:3607720
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC622213 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 18 Proteins pseudo : _no_value

name	LOC100041446 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041446
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG245643 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245643 MGI:3646547
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666424 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666424
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Prps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19139 MGI:97775
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tsc22d3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14605 MGI:1196284
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Mid2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23947 MGI:1344333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC619612 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619612
definition	note : eukaryotic translation initiation factor 2C, 2 pseudogene pseudo : _no_value

name	Tex13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83555 MGI:1890544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC632685 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:632685
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 192 ESTs, 2 Proteins pseudo : _no_value

name	Vsig1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78789 MGI:1926039
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psmd10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53380 MGI:1858898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atg4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666468 MGI:2147903
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 6 Proteins

name	LOC100038961 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038961
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 36 ESTs, 4 Proteins

name	Col4a6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94216 MGI:2152695
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col4a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12830 MGI:88456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Irs4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16370 MGI:1338009
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC633596 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:633596
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 345 ESTs, 7 Proteins

name	EG666488 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666488 MGI:3646868
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 4 Proteins pseudo : _no_value

name	LOC622901 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622901
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 22 Proteins pseudo : _no_value

name	Rbm41 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956383 GeneID:237073 MGI:2444923
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 41 transcript_id : NM_153586.1

name	Gm719 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94408282 GeneID:279706 MGI:2685565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 1 Protein product : gene model 719, (NCBI) transcript_id : XM_205358.4

name	E230019M04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368472 GeneID:331537 MGI:3607720
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E230019M04 gene transcript_id : NM_177921.3

name	LOC100041446 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272288 GeneID:100041446
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041446 transcript_id : XM_001476409.1

name	EG245643 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802623 GeneID:245643 MGI:3646547
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG245643 transcript_id : NM_177750.3

name	Prps1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368021 GeneID:19139 MGI:97775
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphoribosyl pyrophosphate synthetase 1 transcript_id : NM_021463.3

name	Tsc22d3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116517337 GeneID:14605 MGI:1196284
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TSC22 domain family 3 transcript_id : NM_001077364.1

name	Tsc22d3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116517341 GeneID:14605 MGI:1196284
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TSC22 domain family 3 transcript_id : NM_010286.3

name	Mid2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134023660 GeneID:23947 MGI:1344333
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : midline 2 transcript_id : NM_011845.2

name	Tex13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24475713 GeneID:83555 MGI:1890544
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis expressed gene 13 transcript_id : NM_031381.2

name	Vsig1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142346492 GeneID:78789 MGI:1926039
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : V-set and immunoglobulin domain containing 1 transcript_id : NM_030181.2

name	Psmd10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254368 GeneID:53380 MGI:1858898
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 transcript_id : NM_016883.3

name	Atg4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:74136554 GeneID:666468 MGI:2147903
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs, 6 Proteins product : autophagy-related 4A (yeast) transcript_id : NM_174875.3

name	LOC100038961 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272403 GeneID:100038961
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 36 ESTs, 4 Proteins product : similar to autophagin-2 transcript_id : XM_001471981.1

name	Col4a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:16716478 GeneID:94216 MGI:2152695
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type IV, alpha 6 transcript_id : NM_053185.1

name	Col4a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348194 GeneID:12830 MGI:88456
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type IV, alpha 5 transcript_id : NM_007736.3

name	Irs4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58331137 GeneID:16370 MGI:1338009
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : insulin receptor substrate 4 transcript_id : NM_010572.2

name	LOC633596 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272406 GeneID:633596
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins product : similar to high mobility group nucleosomal binding domain 2, transcript variant 2 transcript_id : XM_001472120.1

name	LOC633596 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272408 GeneID:633596
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 345 ESTs, 6 Proteins product : similar to high mobility group nucleosomal binding domain 2, transcript variant 1 transcript_id : XM_001472085.1

name	Rbm41 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956384 GeneID:237073 MGI:2444923
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : RNA binding motif protein 41 protein_id : NP_705814.1

name	Gm719 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38086760 GeneID:279706 MGI:2685565
definition	codon_start : 1 product : hypothetical protein LOC279706 protein_id : XP_205358.2

name	E230019M04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244566 CCDS:CCDS30438.1 GeneID:331537 MGI:3607720
definition	codon_start : 1 product : hypothetical protein LOC331537 protein_id : NP_808589.1

name	LOC100041446 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272289 GeneID:100041446
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476459.1

name	EG245643 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244238 GeneID:245643 MGI:3646547
definition	codon_start : 1 product : hypothetical protein LOC245643 protein_id : NP_808418.1

name	Prps1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946854 CCDS:CCDS30439.1 GeneID:19139 MGI:97775
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : phosphoribosyl pyrophosphate synthetase 1 protein_id : NP_067438.1

name	Tsc22d3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116517338 GeneID:14605 MGI:1196284
definition	GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; glucocorticoid-induced leucine zipper; delta sleep inducing peptide, immunoreactor; TSC22-related inducible leucine zipper 3 product : glucocorticoid-induced leucine zipper isoform 1 protein_id : NP_001070832.1

name	Tsc22d3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116517342 CCDS:CCDS30440.1 GeneID:14605 MGI:1196284
definition	GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; glucocorticoid-induced leucine zipper; delta sleep inducing peptide, immunoreactor; TSC22-related inducible leucine zipper 3 product : glucocorticoid-induced leucine zipper isoform 2 protein_id : NP_034416.3

name	Mid2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754694 GeneID:23947 MGI:1344333
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : midline 2 protein_id : NP_035975.1

name	Tex13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13878205 GeneID:83555 MGI:1890544
definition	codon_start : 1 product : testis expressed gene 13 protein_id : NP_113558.1

name	Vsig1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313488 CCDS:CCDS30443.1 GeneID:78789 MGI:1926039
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation note : glycoprotein A34 product : V-set and immunoglobulin domain containing 1 protein_id : NP_084457.1

name	Psmd10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980811 CCDS:CCDS30444.1 GeneID:53380 MGI:1858898
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] codon_start : 1 note : gankyrin; proteosome subunit p28; proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 product : proteosome (prosome, macropain) 26S subunit, non-ATPase, 10 protein_id : NP_058579.2

name	Atg4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74136555 GeneID:666468 MGI:2147903
definition	EC_number : 3.4.22.- codon_start : 1 exception : unclassified translation discrepancy note : autophagy-related cysteine endopeptidase 2; autophagy 4 homolog A; cysteine protease APG4A; autophagin 2; AUT-like 2, cysteine endopeptidase; APG4 (ATG4) autophagy-related homolog A product : autophagy-related 4A-like protein_id : NP_777364.3

name	LOC100038961 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272404 GeneID:100038961
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472031.1

name	Col4a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716479 GeneID:94216 MGI:2152695
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005581 - collagen [Evidence IEA]; GO:0005587 - collagen type IV [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0005198 - structural molecule activity [Evidence IDA] GO_process : GO:0030198 - extracellular matrix organization and biogenesis [Evidence IDA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : procollagen, type IV, alpha 6 protein_id : NP_444415.1

name	Col4a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677420 GeneID:12830 MGI:88456
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005581 - collagen [Evidence IEA]; GO:0005587 - collagen type IV [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 note : collagen type IV alpha5 chain; procollagen type IV alpha 5 product : procollagen, type IV, alpha 5 protein_id : NP_031762.2

name	Irs4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58331138 CCDS:CCDS30445.1 GeneID:16370 MGI:1338009
definition	GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : insulin receptor substrate 4 protein_id : NP_034702.2

name	LOC633596 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272407 GeneID:633596
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001472170.1

name	LOC633596 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272409 GeneID:633596
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001472135.1

name	LOC666424 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666424
definition	number : 2 pseudo : _no_value

name	LOC666424 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666424
definition	number : 1 pseudo : _no_value

name	LOC622213 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149272290 GeneID:622213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 18 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_032508.1

name	LOC632685 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149272291 GeneID:632685
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 192 ESTs, 2 Proteins product : similar to ribosomal protein S7 pseudo : _no_value transcript_id : XR_032787.1

name	EG666488 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149272405 GeneID:666488 MGI:3646868
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 4 Proteins product : predicted gene, EG666488 pseudo : _no_value transcript_id : XR_035647.1

name	LOC622901 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149272411 GeneID:622901
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 ESTs, 22 Proteins product : similar to heat shock protein 1, beta pseudo : _no_value transcript_id : XR_030584.1

clone name	MSMg01-365H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322C11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158B21
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-153B19.T7 (MSMg01no153_b19.b1)	MSMg01-153B19.TJ (MSMg01no153_b19.g1)
ACC	AG354801	AG354802
length	727	728
length of high quality (start - end)	637 (41 - 677)	560 (67 - 626)
definition	CHROMAT_FILE: MSMg01no153_b19.b1 PHD_FILE: MSMg01no153_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:24 2005	CHROMAT_FILE: MSMg01no153_b19.g1 PHD_FILE: MSMg01no153_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:24 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC CTCCCTCTTCACAAACCCCTTTCACTTCTATAAAACCGAACTCCTCCTTC CAGACTTCCCTATCCACATCTATGTCTGATGCTAAACCTTAAGGACTTCG GATCCTTAAAATCTTCTATTCCGTCATCTTTATGTCTGAGCATATTCTCA GACTTGTAAATGTACACGTCAGTCCTCCCTAGGATACCCCTGTCATAAAT TCACATTTTGCTTGCAGGCAAATGGTATTGGGCGGATGATACTAGATTGC TCCCCCATAGTTTCCTATTATTAACTGAGTCTCGCCTAAATCCAGCAACT GTGACCTCTTCTAGGGAGAGTGAGCCTCTTCAGGGAGAAAGATCAATTCT TATACAGGAAAGTCCTAACTTAAGAAATAGTGTGTCTCAAAATATACCAA ATAACTCATAGTCTTACAGAAACAAAACAATGAGTCACAGTCTCTGTCCT GTACAGACCTTACTTGAAAACCAGCTTAATTCTGAGTATCATGCCATAAA GAATGATGGTAAACAGGTGGGGGGGGGGGACAACCAGTGGCAGAGAAAAA CACATTTTTTCCCTTCCTGGCAGGAATTATGCACAAGACACTTTTTTGCA TGCCCTTGATACCTACTTTCCTTTCTGAGCCCAGCCCCTTAGTCCTGTTT CTAGGCTGTCGTTAAGGGGAATACTTT	ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXTTCAGAAATTCTCTGTTTAGCTCTGTTCCTCGTTTTTTAAT AGGATTGTTTGGTTCTGTGCAGTATCCACTCTATTAGTCTCTGTCTTTTT ACTGGGGAATTGAGTCCATTGATGTTAAGAGATATTAAGGAATAGTGATT GTTCCTTCCTGTTATTTTGGTTGTTAGAGGTGGAATTATGTTTGTGTGGC TATCTTCTTTTGGGTTTGTTAAAAGAATATTACTTTCTTGCTTTTTCCTT GTGTTGGAGTTTTTCCATCTATTATCCTTTGTAGCACTGGATTTGTGGAA AGATATTGTGTAAATTTGGTTTTGTCCTGGAATATCTTGGTTTCTCCATC TATAGTAATTGACAGTTTTTCTGGGTATAGTAGCTTAGGTTGGCATTTGT GTTCTCTTAGGGTCTGTATAACATCTGTCCAGGATCATCTGGCTTTTGTA GTCTCTGGTGAGAAGTCTGGTGTAATTCTGATAGGTCTTCCTTTATATGT TACTTGACTGTGGGGCAGTGGGCAGAGTACAGACAGTCTGGTCTCTAGTG GAGCTGAGGTCTTGAACCCCAGTGGGACCCAGTGGATGGTAATTTCCACC TACATGAATTGTAAGGCGTTCGATCATGTCTCCTGTACCCCTGGCTCCTG TTGAATGTACCATCCCCTAAGCTCCCAA
quality values	Open. Hide. 14 14 25 26 39 41 37 37 37 31 19 19 10 10 10 21 21 47 48 59 31 31 31 30 23 21 23 9 8 8 7 7 7 10 15 13 14 18 24 24 26 37 41 44 38 38 38 38 53 53 59 59 50 50 47 47 43 24 28 12 11 10 10 11 23 25 37 37 47 59 33 36 36 36 36 38 53 53 53 53 57 57 59 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 42 42 43 50 50 50 68 68 68 68 68 68 68 68 51 51 50 51 50 50 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 68 68 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 57 68 68 68 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 52 52 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 62 68 62 62 62 62 52 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 62 62 52 52 52 62 62 68 68 68 68 68 62 62 62 62 68 68 68 62 62 62 62 62 62 52 52 52 62 62 68 62 62 59 59 59 59 59 59 52 45 45 57 57 57 57 52 52 52 52 52 52 59 59 57 52 52 57 59 59 68 59 59 57 57 52 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 57 57 57 59 59 68 68 68 59 59 59 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 68 68 68 57 57 57 57 57 57 57 57 54 54 54 57 57 57 57 57 57 57 59 59 57 57 57 59 59 59 54 54 46 59 40 40 28 30 32 47 42 57 57 48 54 48 48 43 48 59 48 57 57 39 37 29 25 28 30 30 35 43 37 33 30 30 32 37 37 33 33 28 28 30 24 24 24 24 17 18 20 20 23 28 28 35 39 37 37 37 40 39 39 39 39 39 57 50 50 59 59 47 47 47 47 41 39 28 22 14 24 24 31 27 37 37 37 37 37 39 39 36 33 27 28 24 24 19 22 25 34 36 59 59 59 59 37 37 36 33 37 24 15 12 10 10 10 17 14 22 22 37 37 39 37 39 39 37 41 41 41 37 31 25 25 18 22 11 12 14 17 22 25 30 15 15 19 19 19 15 10 10 10 11 12 20 28 30 28 32 23 23 18 24 13 12 10 10 9 16 16 17 15 13 19 19 19 24 10 9 9 12 10 8 10 10 10	Open. Hide. 10 10 9 9 15 13 24 22 25 33 37 37 47 42 48 48 48 43 43 36 36 36 39 41 39 25 11 6 6 6 8 6 8 8 8 9 11 10 11 11 12 25 22 33 33 33 33 33 44 50 50 50 47 36 27 22 11 12 11 9 9 9 9 9 9 10 17 17 24 28 46 48 48 50 59 59 59 59 57 57 57 57 57 48 59 59 59 59 59 59 59 59 59 59 53 57 57 57 50 47 57 36 36 36 42 50 50 59 50 50 50 50 50 50 41 59 25 21 11 11 11 14 16 37 37 37 37 37 41 41 53 53 53 57 57 48 57 57 57 57 57 57 57 57 57 57 57 59 57 57 54 48 48 43 48 48 42 42 42 42 43 43 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 50 50 50 50 50 50 57 57 57 57 47 50 50 47 48 47 47 47 57 57 57 57 59 59 59 68 68 68 59 59 57 57 57 57 57 57 57 57 57 54 52 57 52 52 52 57 52 54 54 59 57 57 57 57 57 57 57 68 68 68 68 68 57 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 59 68 68 68 62 62 62 62 62 62 62 62 62 52 62 62 62 62 68 68 68 68 68 44 44 23 34 24 35 35 44 44 62 62 62 68 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 43 43 62 62 62 62 62 62 62 62 52 52 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 44 43 35 43 35 43 43 62 62 52 62 62 52 62 62 59 59 59 57 57 57 52 57 57 57 57 57 52 52 52 52 52 57 57 52 52 52 57 57 59 57 57 59 59 59 57 52 52 52 57 57 57 57 57 59 59 42 38 38 35 43 43 57 52 52 52 57 57 57 59 59 59 59 59 57 57 43 43 32 22 22 36 44 52 57 57 57 57 52 57 57 57 44 44 50 43 43 43 43 43 44 59 50 47 43 35 37 37 43 31 36 23 23 25 36 26 30 15 14 14 24 25 37 37 42 44 46 57 47 47 44 44 43 43 43 57 57 57 59 59 59 39 37 32 37 37 47 47 54 57 48 46 46 43 43 31 31 23 23 23 32 28 30 28 25 25 32 32 30 28 21 18 11 11 15 15 28 30 28 28 23 16 12 10 10 10 21 15 25 30 37 37 39 37 26 23 14 14 15 28 30 37 37 30 24 17 14 15 14 24 24 24 24 28 28 26 28 30 23 23 9 14 10 12 10 14 17 17 24 23 31 19 22 22 21 14 12 10 10 18 25 28 19 15 11 17 13 15 17 19 10 15 17 22 13 12 12 9 9 12 12 11 11 11 11 11 17 19 19 19 18 22 23 26 24 23 19 14 10 10 14 13 9 9 9 15 16 11 12 10 13 13 21 19 15 22 21 13 13 13 13 8 6 6 6 6 10 10 11 15 19 24 19 12 10 9 9 10 10 10 15 11 10 10 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no153_b19.b1 MSMg01no153_b19.b1 CHROMAT_FILE:
MSMg01no153_b19.b1 PHD_FILE: MSMg01no153_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:24 2005
         (637 letters)



>mm_chrX_137440577_137441618
          Length = 1042

 Score = 1180 bits (610), Expect = 0.0
 Identities = 630/638 (98%), Gaps = 5/638 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctccctcttcacaaacccctttcacttctataaaaccgaactcctccttccaga 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gaattcctccctcttcagaaacccctttcacttctataaaaccgaactcctccttccaga 783

                                                                       
Query: 65  cttccctatccacatctatgtctgatgctaaaccttaaggacttcggatccttaaaatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 cttccctatccacatctatgtctgatgctaaaccttaaggacttcggatccttaaaatct 723

                                                                       
Query: 125 tctattccgtcatctttatgtctgagcatattctcagac-ttgtaaatgtacacgtcagt 183
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 722 tctattccgtcatctttatgtctgagcatattctcagactttgtaaatgtacacgtcagt 663

                                                                       
Query: 184 cctccctaggatacccctgtcataaattcacattttgcttgcaggcaaatggtattgggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cctccctaggatacccctgtcataaattcacattttgcttgcaggcaaatggtattgggc 603

                                                                       
Query: 244 ggatgatactagattgctcccccatagtttcctattattaactgagtctcgcctaaatcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggatgatactagattgctcccccatagtttcctattattaactgagtctcgcctaaatcc 543

                                                                       
Query: 304 agcaactgtgacctcttctagggagagtgagcctcttcagggagaaagatcaattcttat 363
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 542 agcaactgtgacctcttctagggagaatgagcctcttcagggagaaagatcaattcttat 483

                                                                       
Query: 364 acaggaaagtcctaacttaagaaatagtgtgtctcaaaatataccaaataactcatagtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acaggaaagtcctaacttaagaaatagtgtgtctcaaaatataccaaataactcatagtc 423

                                                                       
Query: 424 ttacagaaacaaaacaatgagtcacagtctctgtcctgtacagaccttacttgaaaacca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttacagaaacaaaacaatgagtcacagtctctgtcctgtacagaccttacttgaaaacca 363

                                                                       
Query: 484 gcttaattctgagtatcatgccataaagaatgatggtaaacaggtgggggg---ggggga 540
           |||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||
Sbjct: 362 gcttaattctgagtatcatgccataaagaatgatggtaaacaggcggggggcggggggga 303

                                                                       
Query: 541 caaccagtggcagagaaaaacacatttttt-cccttcctggcaggaattatgcacaagac 599
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 302 caaccagtggcagagaaaaacacatttttttcccttcctggcaggaattatgcacaagac 243

                                                 
Query: 600 acttttttgcatgcccttgatacctactttcctttctg 637
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acttttttgcatgcccttgatacctactttcctttctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1042
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1032
Effective search space:   647064
Effective search space used:   647064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information