BAC Information

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BAC

Clone NameMSMg01-153M18
ChromosomeX (Build37)
Map Location 99,611,758 - 99,612,373
singlet/doubletsinglet
Overlap geneHdac8
Upstream geneZmym3, Nono, Itgb1bp2, LOC620837, Taf1, Ogt, LOC620865, LOC668291, Cxcr3, LOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1
Downstream genePhka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153M18.T7 (MSMg01no153_m18.b1)MSMg01-153M18.TJ (MSMg01no153_m18.g1)
ACCAG355285AG355286
length723724
length of high quality
(start - end)		620 (37 - 656)610 (66 - 675)
definitionCHROMAT_FILE: MSMg01no153_m18.b1 PHD_FILE: MSMg01no153_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:15 2005CHROMAT_FILE: MSMg01no153_m18.g1 PHD_FILE: MSMg01no153_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCAGAA
GAGGGCTCCGTCAGAGACCCAAAGAATCACTCATCAGTCCCGAATGTGAG
GCCGGTCAACTTTTCTTCTCTGTGTGTTTTCTATACTTTTGCAATCCTAT
CTCAACTCAGGTACTGCTGACTCATTCTGCAAAGACTCAAGCTGTCAGGG
GACTCAGCATATGGCGAATGCCTCAGTGATTTCAGATCTATTACAAATAG
TTGTGGGAGGCAGGAATTGGAGTGGGGCTCCCTGCAGTGAGGATGATGTG
TCATTTCTTTGGGGGGCCACGGGTGCCTCTTGGACACATTTAAGGCATTT
AATTTCCTATGTTGTTTTTTTTTTCCTCTGCTTTTAGCATCAGGCAAGCT
GTACTGGTTTCCCAGACATCTAAAACATCCAAACCTATAAAATAAAAACC
AAATCTTAAAACTCTCCAAATTCACCAACCAACCCACAACCTGTCCTCTC
TTTTTTTTTCTTTTAATTTTTATGACGTAGCACTTTAAAGGAATATTTTT
TTTCCTCTCATTGCTGAGCCCATTACATAAAAACATAGATTCTAATTGGC
ATCTCTTTCTATGCTGGCCTTGTAGTATACGTAATTCTCTCATTAATTAT
ATTTCACCTTGGCAACAGGAAGGGATGTACACTATTTTTAGTGCATTATT
ACTTATCCCTTGCTGTACTTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAGTCCTCCA
TTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGC
GGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
ATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAG
CCCCAAACCTAGGATACCCAAGATGTAAGATATAATTTGCTAAACACATG
AAACTCAAGAAGAATGAAGACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_m18.b1 MSMg01no153_m18.b1 CHROMAT_FILE:
MSMg01no153_m18.b1 PHD_FILE: MSMg01no153_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:15 2005
         (620 letters)



>mm_chrX_99611555_99612573
          Length = 1019

 Score = 1160 bits (600), Expect = 0.0
 Identities = 613/618 (99%), Gaps = 3/618 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaagagggctccgtcagagacccaaagaatcactcatcagtcccgaatgtga 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagaagagggctctgtcagagacccaaagaatcactcatcagtcccgaatgtga 263

                                                                       
Query: 64  ggccggtcaacttttcttctctgtgtgttttctatacttttgcaatcctatctcaactca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggccggtcaacttttcttctctgtgtgttttctatacttttgcaatcctatctcaactca 323

                                                                       
Query: 124 ggtactgctgactcattctgcaaagactcaagctgtcaggggactcagcatatggcgaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtactgctgactcattctgcaaagactcaagctgtcaggggactcagcatatggcgaat 383

                                                                       
Query: 184 gcctcagtgatttcagatctattacaaatagttgtgggaggcaggaattggagtggggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcctcagtgatttcagatctattacaaatagttgtgggaggcaggaattggagtggggct 443

                                                                       
Query: 244 ccctgcagtgaggatgatgtgtcatttctttggggggccacgggtgcctcttggacacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccctgcagtgaggatgatgtgtcatttctttggggggccacgggtgcctcttggacacat 503

                                                                       
Query: 304 ttaaggcatttaatttcctatgttgttttttttttcctctgcttttagcatcaggcaagc 363
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 504 ttaaggcatttaatttcctatgttgtttttttttttctctgcttttagcatcaggcaagc 563

                                                                       
Query: 364 tgtactggtttcccagacatctaaaacatccaaacctataaaataaaaaccaaatcttaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtactggtttcccagacatctaaaacatccaaacctataaaataaaaaccaaatcttaa 623

                                                                       
Query: 424 aactctccaaattcaccaaccaacccacaacctgtcctctctttttttttcttttaattt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 624 aactctccaaattcaccaaccaacccacaacctgtcctctcttttttt--cttttaattt 681

                                                                       
Query: 484 ttatgacgtagcactttaaaggaatatttttttt-cctctcattgctgagcccattacat 542
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 682 ttatgacgtagcactttaaaggaatatttttttttcctctcattgctgagcccattacat 741

                                                                       
Query: 543 aaaaacatagattctaattggcatctctttctatgctggccttgtagtatacgtaattct 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaaaacatagattctaattggcatctctttctatgctggccttgtagtatacgtaattct 801

                             
Query: 603 ctcattaattatatttca 620
           ||||||||||||||||||
Sbjct: 802 ctcattaattatatttca 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space:   615490
Effective search space used:   615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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