Query= MSMg01no154_f20.b1 MSMg01no154_f20.b1 CHROMAT_FILE:
MSMg01no154_f20.b1 PHD_FILE: MSMg01no154_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:58 2005
(249 letters)
>mm_chrX_55843654_55844302
Length = 649
Score = 424 bits (219), Expect = e-123
Identities = 239/247 (96%), Gaps = 4/247 (1%)
Strand = Plus / Minus
Query: 4 ggaattctaaatcac--tccgctgccaccttgggcctctatttttaggaaggaaaatctt 61
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggaattctaaatcacatt--gctgccaccttgggcctctatttttaggaaggaaaatctt 331
Query: 62 ttctccgtgttgagcatccagcagaaaagccaagtcctgacagcctcagagacagctgtt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttctccgtgttgagcatccagcagaaaagccaagtcctgacagcctcagagacagctgtt 271
Query: 122 gtcttgaattaaatgtacactttgtgagctgcatatggaaaactttcctttttttttttt 181
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtcctgaattaaatgtaccctttgtgagctgcatatggaaaactttcctttttttttttt 211
Query: 182 tttttttttttgggtttttgagacagggtttctctctatagccctggctgtcctggaact 241
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 210 tttttttttttggttttttgagacagggtttctctctatagccctgggtgtcctggaact 151
Query: 242 cactttg 248
|||||||
Sbjct: 150 cactttg 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no154_f20.g1 MSMg01no154_f20.g1 CHROMAT_FILE:
MSMg01no154_f20.g1 PHD_FILE: MSMg01no154_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:59 2005
(485 letters)
>mm_chrX_55696135_55697019
Length = 885
Score = 915 bits (473), Expect = 0.0
Identities = 482/485 (99%)
Strand = Plus / Plus
Query: 1 acttattacattggagagtcagtggtagttagaaacgaaaagccccgaacatagctaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 acttattacattggagagtcagtggtagttagaaacgaaaagccccgaaaatagctaagt 260
Query: 61 atttgtcagatacagaggacttagttaaaagttgaacattttcattaaagtgatgggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgtcagatacagaggacttagttaaaagttgaacattttcattaaagtgatgggatt 320
Query: 121 ttcccagaatgccttgaggctcaagagtggcaggggaaacttaagtggacatgtgtttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcccagaatgccttgaggctcaagagtggcaggggaaacttaagtggacatgtgtttat 380
Query: 181 ctctgagatggcaagatgccttcacttgagaataacacttgcagtctctaaggaaaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgagatggcaagatgccttcacttgagaataacacttgcagtctctaaggaaaatca 440
Query: 241 tgaaggcagatttgcttggtaagttgcaaggaacaacttagttggcctagacttttgagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaggcagatttgcttggtaagttgcaaggaacaacttagttggcctagacttttgagc 500
Query: 301 tatagtgctctagttcattactgatgtctgcaaagtaccaaggtccagcaggtccagtag 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 tatagtgctctagttcattactgatgtctgcaaagtaccgaggtccagcaggtccagtag 560
Query: 361 agccatgcaagtatttactgaaggctaatattccttgttatgtcatagtgtatttcttag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccatgcaagtatttactgaaggctaatattccttgttatgtcatagtgtatttcttag 620
Query: 421 gattgtctcacacatctatttgtcccatcattttagctataaagaagtggagccacaatt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 gattgtctcacacatctatttgtcccatcattttagctataaagaagtggagtcacaatt 680
Query: 481 tttaa 485
|||||
Sbjct: 681 tttaa 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
