BAC Information

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BAC

Clone NameMSMg01-155N07
ChromosomeX (Build37)
Map Location 47,434,219 - 47,434,708
singlet/doubletsinglet
Overlap genenone
Upstream geneEnox2, 1100001E04Rik, LOC100041697, Olfr1320, Olfr1321, Igsf1, Olfr1322, LOC100040344, Olfr1323
Downstream geneEG665816, Olfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155N07.T7 (MSMg01no155_n07.b1)MSMg01-155N07.TJ (MSMg01no155_n07.g1)
ACCAG356735AG356736
length734731
length of high quality
(start - end)
128 (255 - 382)487 (78 - 564)
definitionCHROMAT_FILE: MSMg01no155_n07.b1 PHD_FILE: MSMg01no155_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:49 2005CHROMAT_FILE: MSMg01no155_n07.g1 PHD_FILE: MSMg01no155_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGGA
ATTCCAAAAATAAAGAATTAAAGATATGAAATGACTCCATTCAAAACTAC
TTTATGGATCCGAATAGGCATCTCAAAAGGAGAAAAAAAATTGCTTAAGA
AACTTCCAAACCCTCTTCATCATTCTTAGCAATTATGGATTTACAAGTAA
AAACAATTTAAGATTTCATGTCACTCCAGTAAGAATGGTTATAATCAATA
AAACATGTAAAAACAAATCAAGAATGGAGTCCTTCATTCCCTTTAGTGGA
GCTGCATACTGGTACAGCCACTCTGGAAATCAGCATGAAGAGTTATCAAA
GAGCCAAAAGTAAATCTGTCATATGACTCACTTGTACCATATCTTGGCCT
ATGCTCCAAAGACTTGACTTTCTATTCCACAGCCATGTTCACTGATGTGT
TCCTAACAGTCAAAGAATAGAAACTACCTAAACATTATTCAATTGATGAA
AATGAAGATGCTATCCATATCCACTGTAGAATAGTATCTCGCATAAAAAT
TGAGATCCTTACACTTTCAAGCAAATGAGTGGAACTAGCAAATAATTTAC
CTGAGCCAAAAACCAGGAGAAAAACTAACCCCACACCATGCTCCCCCCTT
ATCCGTGATTCCTACCTTCCCATTCCCACATGCCACTATATCACCCGGAG
CACACCCCGAAACCAAGAAAACCCACCCCAAGTG
CGACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAATACTTTAATCATTAATGC
ACAGTAGGAGATGAAAGTACCCTTTACTTGTGTTATAACATAACAGGATA
AGCCCTGAGATATAGCACACTACTTTTCCAGTGACAGGTTGAAAATTCAC
TTTTTCAGTTTTTCTCATACATTGCTAACCCACTGAGAAAATAGAAATGA
ATGTTTAATTATTCACATTGGTGAAACAGCCTGGATACATTGGGAAGCAT
ATATGAAGCATTTGGTACAGACCATGCCTGACCTAAAGCTATACTACAGA
ATTCCCATCATATGAAGAGTTGGAAACATAGCTGAACTTATTTAGCTAAA
AAAAAAAAAAGACAAGAAACTAGAAGAAATTATGAATTGAACTTGAAGTG
CTAAGAAAATGGAGCTACAGTTACTTCATCAAAGTTAGTTACCTGGTATT
AAAAGTGCTTCTTGAGCTTGCTAACAGGAGCCTGATATAGCTGTCTCTTG
AGAGGCTCTGCCAGCGCTTCACAAATACAGAAGAGGATGCTCACAGCCAT
CCATGGGACTGACCACAGGGTCCCCAATGGAGGAGCTAGAGAAAGTACCC
CCGGAGCTGAAGGAGTTTGCCGCCTTATAGGAGGAACAACCATATGAAGT
GACCAGTACCCCCAGAGCCTCCAGGGAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_n07.g1 MSMg01no155_n07.g1 CHROMAT_FILE:
MSMg01no155_n07.g1 PHD_FILE: MSMg01no155_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:49 2005
         (487 letters)



>mm_chrX_47434019_47434908
          Length = 890

 Score =  901 bits (466), Expect = 0.0
 Identities = 483/490 (98%), Gaps = 3/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaatactttaatcattaatgcacagtaggagatgaaagtaccctttacttgtgttata 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaagactttaatcattaatgcacagtaggagatgaaagtaccctttacttgtgttata 260

                                                                       
Query: 61  acataacaggataagccctgagatatagcacactacttttccagtgacaggttgaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acataacaggataagccctgagatatagcacactacttttccagtgacaggttgaaaatt 320

                                                                       
Query: 121 cactttttcagtttttctcatacattgctaacccactgagaaaatagaaatgaatgttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactttttcagtttttctcatacattgctaacccactgagaaaatagaaatgaatgttta 380

                                                                       
Query: 181 attattcacattggtgaaacagcctggatacattgggaagcatatatgaagcatttggta 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attattcgcattggtgaaacagcctggatacattgggaagcatatatgaagcatttggta 440

                                                                       
Query: 241 cagaccatgcctgacctaaagctatactacagaattcccatcatatgaagagttggaaac 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 cagaccatgcctgacctaaagctatactacagaatccccatcatatgaagagttggaaac 500

                                                                       
Query: 301 atagctgaacttatttagctaaaaaaaaaaaaa---gacaagaaactagaagaaattatg 357
           |||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||
Sbjct: 501 atagctgaacttatttagctaaaaaaaaaaaaaaaagacacgaaactagaagaaattatg 560

                                                                       
Query: 358 aattgaacttgaagtgctaagaaaatggagctacagttacttcatcaaagttagttacct 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattgaacttgaagtgctaagaaaatggagctacagttacttcatcaaagttagttacct 620

                                                                       
Query: 418 ggtattaaaagtgcttcttgagcttgctaacaggagcctgatatagctgtctcttgagag 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtattaaaagtgcttcttgagcttgctaacaggagcctgatatagctgtctcttgagag 680

                     
Query: 478 gctctgccag 487
           ||||||||||
Sbjct: 681 gctctgccag 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 890
Length adjustment: 10
Effective length of query: 477
Effective length of database: 880
Effective search space:   419760
Effective search space used:   419760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)