BAC Information

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BAC

Clone NameMSMg01-156C04
ChromosomeX (Build37)
Map Location 128,784,263 - 128,784,577
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670449, LOC245600, EG631264
Downstream geneLOC665846, LOC665850, LOC665854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156C04.T7 (MSMg01no156_c04.b1)MSMg01-156C04.TJ (MSMg01no156_c04.g1)
ACCAG356952AG356953
length750735
length of high quality
(start - end)
319 (46 - 364)87 (58 - 144)
definitionCHROMAT_FILE: MSMg01no156_c04.b1 PHD_FILE: MSMg01no156_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:11 2005CHROMAT_FILE: MSMg01no156_c04.g1 PHD_FILE: MSMg01no156_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTACAGAGCAAACTAATACAAAGACATACTGGACTGTTCTATCAG
GTAGAATAAGATAAAGCCAGACCTAGTGTCTTTTCTCCAATACTCTCCCA
GTACACTTCCAACACAGCTTATTCACAAACTGAGAGATGGAAGGGAGCAT
TGTGTATACTCGCTGAAAAACATTTGCTCTATGTTTATTGCTAATGCATG
AACATTTCTCAAATCTCATGTTAGTTAATACTTTAACAGTGAGAATAATA
TCAGCAGTAAGATTATTTCTTTGTCTTCACACAACTTCTTGTGGTTCCAT
GTCTCTGTGGGACTGTACTGTGCTTCCTATGTGTCTCTGTTTAATGTCTT
AATGTTGTACCACATCCTATATAAATTTGTTTCTATTTTATTATGGTTAA
CATGTACTAGAGTAGAGACCCAGAGATAACATATGTATTTTGATCATCAT
TATATCCTACAAAGACACTAAAGAAAAATGCACTTAAGTAAATTAGTTAG
AGCCAAGATAAATGCGATGAAAGAATAAATATAGATGGTTGTTACATGCA
GCATGCCTAGGTCATCATTTGCATTGGATTTGAGTGGTACTACAACAAAT
CACCAAAATAATTTCCTACCTATTTTANGAATCTGAATTTACACTACTGT
GGATCCCACATTTCCAGAAGGGCCTTGTAAAGCTTCATCCAAGAATTTCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTAAAATATGTAAAAATGAAAATAAGTTTTGAAAGAATTTTAA
TGAGAGATGACATAACCCCATTTCTTTCTCTAATAAAATGATGTCACATA
GTAGATAAAATAAGGAAATATAATGGTTTGTTTTGATCAAAGTTAAACTT
ATAACCCATGGTCACAAAATAGGACTAGTATTTACTTAGTAACAGAATTC
AGGTAACATGAGGCATCATATAATGAGAGAAAAGTCTTTCAAACTATTAA
TCCTTTATGCTATTAATTAAACCTTATAGGGGAGTCCTAAACAATTTTTA
TAGGCCTCCCCCGGCCCTACTTCTAAATATTCTATAATAAATATTATATT
TCAATATGTGTTTCAAAAAGGATTATTTGTATTGAAATTATAGTAAAGGG
AGTAGACTATAGAATTGTGAATGACAATTCAATCAAAGCTCATTTCCCAT
TGAATTTTATGCAAATAAAACTAAGCCAATTTCCAAATGTAAATGTTACC
CACTAATGTGTTTATCTTGAATAATTTGCATATATTATGAGTGACTCAAA
GATATTGCCCTGGTGCAAAAATGTTGAGCCTCTTGCTCCCTTATAAAAAT
GTAATAATAGATGTCCCTTACCTACACGGGTAACTTAAAAAGGAATATGG
ATAAGTCTCCCCCGGTAAATTTGTCTTTCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_c04.b1 MSMg01no156_c04.b1 CHROMAT_FILE:
MSMg01no156_c04.b1 PHD_FILE: MSMg01no156_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:11 2005
         (319 letters)



>mm_chrX_128784059_128784777
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctacagagcaaactaatacaaagacatactggactgttctatcaggtagaataa 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcctacatagcaaactaatacaaagacatactggactgttctatcaggtagaataa 460

                                                                       
Query: 65  gataaagccagacctagtgtcttttctccaatactctcccagtacacttccaacacagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gataaagccagacctagtgtcttttctccaatactctcccagtacacttccaacacagct 400

                                                                       
Query: 125 tattcacaaactgagagatggaagggagcattgtgtatactcgctgaaaaacatttgctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tattcacaaactgagagatggaagggagcattgtgtatactcgctgaaaaacatttgctc 340

                                                                       
Query: 185 tatgtttattgctaatgcatgaacatttctcaaatctcatgttagttaatactttaacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tatgtttattgctaatgcatgaacatttctcaaatctcatgttagttaatactttaacag 280

                                                                       
Query: 245 tgagaataatatcagcagtaagattatttctttgtcttcacacaacttcttgtggttcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgagaataatatcagcagtaagattatttctttgtcttcacacaacttcttgtggttcca 220

                          
Query: 305 tgtctctgtgggact 319
           |||||||||||||||
Sbjct: 219 tgtctctgtgggact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)