BAC Information

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BAC

Clone NameMSMg01-156L08
ChromosomeX (Build37)
Map Location 38,255,090 - 38,255,255
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636756, EG636766, EG245391, LOC100039769
Downstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156L08.T7 (MSMg01no156_l08.b1)MSMg01-156L08.TJ (MSMg01no156_l08.g1)
ACCAG357378AG357379
length725726
length of high quality
(start - end)
314 (46 - 359)167 (155 - 321)
definitionCHROMAT_FILE: MSMg01no156_l08.b1 PHD_FILE: MSMg01no156_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:54 2005CHROMAT_FILE: MSMg01no156_l08.g1 PHD_FILE: MSMg01no156_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTC
TGTTCAGGAATCTTTCCCCTGTTTTTTATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAATTTCATTCCNNNCCGATTCACGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTCCCACAATAACACAAGAATGGATCGATTCGTATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGCGTGTGAGTTCATTTCTGGCTCTTCAATTCTATTCCATTGGTCC
ACTTGTCCTGTCCCTATACCATTACCTTGCCGTTTTTTTCACCCCCTGCC
CTGTACTATATCTTTAGTGCCGTGCTACTGATTCCACCTTATGTTCTTTT
ACTCTTGATAAGAGTTTTTGCTATC
CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCAGGGAATGTAATTCATGTTTTATT
TATTTATTCATTCATTCATTCATTCATTCATTCATTCACTTTACATCCTG
ATGGGGGGCTTCCATCCCTCCTTTCCTCTCAGTCGCACCCTTACAAATCT
CTCCCTCATTAATTCCTCCCTTTCTCTGAGGAGAAGGGGAACTCCCACTT
GAGTACCACCCTCTGGCATATCAAGTTGCAGTAGGCCTATGCACATCTGC
TCCTACTGAAGCCCAAGCATGTATTCCAGAAAGGAGAGAGGGATCTAATC
ATTGAAAGTCTTTGTTTTTCAAACACCCCCCCTGTTCCAATTGTTAGGGG
ACTCACATTAAAAAATAACCCCCCACAAATAGAAAACAAATCTGTAGGAG
GCCTAGGCCCACACCCTGCATGCTCTTTGGTTGGCGGCTCAGTTTCGGGG
AGCCCCAATGGGTGGCACTCCATTACAGAGCCTGTTTTCATAGAAACAAA
GATATAGAAATCTTCAGTTTATGAATTTTCTCTGGGGTCTTAAAAAGTCT
TCTCTATAATTGATTATTCCTTTAGGGCCAGATATGGTAATGTGTGTAGG
TGAATGCCATTCATCTCTGTACTTAGTAGTTTTACAATGGTAAACCACTG
TGAGCCTGGTTTCAAGACTAATCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_l08.g1 MSMg01no156_l08.g1 CHROMAT_FILE:
MSMg01no156_l08.g1 PHD_FILE: MSMg01no156_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:54 2005
         (167 letters)



>mm_chrX_38254889_38255455
          Length = 567

 Score =  313 bits (162), Expect = 3e-90
 Identities = 165/166 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   gggcttccatccctcctttcctctcagtcgcacccttacaaatctctccctcattaattc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gggcttccatccctcctttcctctcagtcgcacccttacaaatctctccctcattaattc 308

                                                                       
Query: 62  ctccctttctctgaggagaaggggaactcccacttgagtaccaccctctggcatatcaag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 307 ctccctttctctgaggagaaggggaactcccacttgagtaccaccctctggcatatccag 248

                                                         
Query: 122 ttgcagtaggcctatgcacatctgctcctactgaagcccaagcatg 167
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttgcagtaggcctatgcacatctgctcctactgaagcccaagcatg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)