Query= MSMg01no157_d03.b1 MSMg01no157_d03.b1 CHROMAT_FILE:
MSMg01no157_d03.b1 PHD_FILE: MSMg01no157_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:30 2005
(693 letters)
>mm_chr3_158244302_158245394
Length = 1093
Score = 1255 bits (649), Expect = 0.0
Identities = 670/677 (98%)
Strand = Plus / Minus
Query: 5 gaattcattgaccctttcactgaccctttttagtgctttcattgctggcaaataaccata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaattcattgaccctttcactgaccctttttagtgctttcattgctggcaaataaccata 618
Query: 65 gatttgtctcaggccctatgctttagatcactaacataagcatttaccctctgcgctgat 124
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gatttgtctcaggttctatgctttagatcactaacataagcatttaccctctgcgctgat 558
Query: 125 atgtgataattaccctgtggaaatgtattctttcaaaatttttgcttgaaaatatagatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgtgataattaccctgtggaaatgtattctttcaaaatttttgcttgaaaatatagatg 498
Query: 185 ttggataagagttctctaggagatagaaatgcaagtcattggctgtattgcatgttatgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 ttggataagagttctctaggagatagaaatgcaagtcattggctgtattgcatattatgg 438
Query: 245 ggacacatttcattccaggaaactcacaatctaatggcaatggtctagttttagctttga 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggacacatttcattccagaaaactcacaatctaatggcaatggtctagttttagctttga 378
Query: 305 gttgtaatgcttcttttattaaagttttgcttgcaaaaatcaacatttaaactgacaggg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gttgtaatgcttcttttattaaagttttgcttgcaaaaatcaacatttaaactgacaggg 318
Query: 365 cctttgtccctatttgccataatctaatctgttctcaatttctcagtctaaggaaaggtc 424
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 317 cctttgtccctatttgccataatctaatctgttctcaatttctcaatctaaggaaaggtc 258
Query: 425 ttgaatatgttcttatgctctggaactcacagacatgtttgttttctaatattttctttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgaatatgttcttatgctctggaactcacagacatgtttgttttctaatattttctttg 198
Query: 485 agattgtatacatgcatacaacatatactgaacatattcactcctcactcctcttcttaa 544
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 197 agattgtatacatgcatacaacatatactgaatatattcactcctcactcctcttcttaa 138
Query: 545 atcaaacctcactttcctaccatctttcctattttatgtttgtttgtttgtttgtttatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 137 atcaaacctcactttcctaccatctttcctattttatgtttgtttgtttgtttgtttgtt 78
Query: 605 tatatgacccactgagttaaatgtatgctgcatatatactcatgagtctgaagccactgg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 tatatgacccactgagttaaatgtatgctgcatatatactcatgagtctgaagccactgg 18
Query: 665 aggatggatggaactaa 681
|||||||||||||||||
Sbjct: 17 aggatggatggaactaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_d03.g1 MSMg01no157_d03.g1 CHROMAT_FILE:
MSMg01no157_d03.g1 PHD_FILE: MSMg01no157_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:30 2005
(511 letters)
>mm_chrX_19942501_19943405
Length = 905
Score = 737 bits (381), Expect = 0.0
Identities = 453/489 (92%), Gaps = 24/489 (4%)
Strand = Plus / Minus
Query: 10 cttccatttgttaaaagccaacattttgaaaatgtcatttatatgaatgcctaaattctg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cttccatttgttaaaagccaacattttgaaaatgtcatttatatgaatgcctaaattctg 530
Query: 70 ctggggatttgaagtgatgcaggatgatttgtcataccaaacaaggatgcaggatgactg 129
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctggggatttgaaatgatgcaggatgatttgtcataccaaacaaggatgcaggatgactg 470
Query: 130 gttataacaaaacaagacttactataaagtacttctggtcaaagttgttgcattaagcaa 189
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 469 gttataacaaaacaagactt----t--agtacttctggtcaaagttgttgcattaagcaa 416
Query: 190 tagttaactgttcatgacacccatttaaaagaacaagtgttcttattttgtttgagaaac 249
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 415 tagttaactgttcatgacacccatttaaaagaacaagcgttcttattttgtttgagaaac 356
Query: 250 caaaataattgatgtctattaagtgttttactaagcaactacactaacaagaaaagaaga 309
| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 355 tataataattgatgtctattaagtgttttacaaagcaactacactaagaagaaaagaaga 296
Query: 310 actatgtagaaagaggaaccattgtaaaatgtatgcctaagtaagtgtgttttgtgcaag 369
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 295 actttgtagaaagaggaaccattgtgaaatgtatgcctaagtaagtgtgttttgtgcaag 236
Query: 370 attaggagactttttcaaaccttttgggatatatatatatatgtatatatgtgtgtgtat 429
|||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 235 attaggagactttttcaaaccttttgagatatatatatatatatatatat--------at 184
Query: 430 gtgtatgnatatatatacacatatatgtatatatgtatatatatatatatatatatatat 489
|| ||||||||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct: 183 ----at--atatatata----tatatatatatatatatatatatatatatatatatatat 134
Query: 490 atatatata 498
|||||||||
Sbjct: 133 atatatata 125
Score = 124 bits (64), Expect = 2e-32
Identities = 89/98 (90%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 414 atatatgtgtgtgtatgtgtatgnatatatatacacatatatgtatatatgtatatatat 473
|||| ||||||||||| | ||| ||||||||| | |||||| ||||||| |||||||||
Sbjct: 112 atatgtgtgtgtgtatatatat--atatatatatatatatatatatatatatatatatat 169
Query: 474 atatatatatatatatatatatatatatatatatatat 511
||||||||||||||||||||||||||||||||||||||
Sbjct: 170 atatatatatatatatatatatatatatatatatatat 207
Score = 93.5 bits (48), Expect = 3e-23
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 440 atatatacacatatatgtatatatgtatatatatatatatatatatatatatatatatat 499
||||||||| || | ||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct: 104 atatatacatatgtgtgtgtgtatatatatatatatatatatatatatatatatatatat 163
Query: 500 atatatatatat 511
||||||||||||
Sbjct: 164 atatatatatat 175
Score = 81.9 bits (42), Expect = 1e-19
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 446 acacatatatgtatatatgtatatatatatatatatatatatatatatatatatatatat 505
|||||||||| |||| ||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 100 acacatatatacatatgtgtgtgtgtatatatatatatatatatatatatatatatatat 159
Query: 506 atatat 511
||||||
Sbjct: 160 atatat 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 219
Number of extensions: 97
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 15
Length of query: 511
Length of database: 905
Length adjustment: 10
Effective length of query: 501
Effective length of database: 895
Effective search space: 448395
Effective search space used: 448395
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
