BAC Information

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BAC

Clone NameMSMg01-157J09
ChromosomeX (Build37)
Map Location 139,873,915 - 140,050,604
singlet/doubletdoublet
Overlap genenone
Upstream geneEG245651, LOC100039086, EG436235, Tmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
Downstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157J09.T7 (MSMg01no157_j09.b1)MSMg01-157J09.TJ (MSMg01no157_j09.g1)
ACCAG358029AG358030
length759714
length of high quality
(start - end)
277 (69 - 345)282 (74 - 355)
definitionCHROMAT_FILE: MSMg01no157_j09.b1 PHD_FILE: MSMg01no157_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:57 2005CHROMAT_FILE: MSMg01no157_j09.g1 PHD_FILE: MSMg01no157_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,873,915 - 139,874,191)(140,050,323 - 140,050,604)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGTGGTGCCATCTTCCAAAGGCTCTGGTAAAAACCATTATGATCA
GGATGTCCAGGTCACATGAACTGCTTCCTTGTCCCTGTGCCTTCCTGCCG
CTATGACTTTGGGGAAATTATAAATTTTTAAAGAGCAGGTTTTCAAACAC
ATCTTGACCTAAGAAGGGAGGGAGGGATGCATTTTTGAGTTTCAGAGTCC
ATGAAATGACATCATGATGCAGCTACTTACTCTTAAGGCACACCCTGGCT
CTTGATCAAATGACCGAAATGTGAGTTGAGGTGGGGGGGGGGAGGCCAGT
CCTCNTTTTTTTCTCCCCCCCCCCCCTTTTTTTTCTCTTTCTTGTTCTTC
TTTTTTTTCCCCCCCCCCCCTTTTATAATACATTTTCCTAATATTTATTA
TTCCATTAATCACAATATAATTCTAACATAATCTTTCTTCTTTACTTCTT
TTTGTTAATTATTCTTTACAATATCTATCATCTATCCCCTCGTTCAACTC
ATTCTAATATGTCCAGTTTTCTTATTCAACACCCTCACACCACACTCTAA
TCAACTTTTCTTTTTCTTGTTATTCATCTTCTCTCTCCCGCCATATTTTT
CCTTTCTCACTTTTAAGTTCGTTTCAAAACCCTAGACACACAATTTATAA
GACGAAACTCTACCCTTTATTCCTACCTCTTTACATTCTCTTCATCCTTT
TTTCCTACT
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAACTCAAAGTAGTAAATTTTATTA
TGGTCCTTTATATACATACCTTTATATTTTGTTCTCCTTCACCTCTCTGT
TCTACTGCTTCTCCCTGTCCTTTAAATAGTTCCCTTCTTCCTCCTCATAT
AATTCATCATTCTGCCAAAAAGCTCTTTTCCAAGTTTAATTTAAGCAGCT
TTGTAGGCTGGAATCCTTTCTACTGTAATCCTGATGGGCTAGTACTTCAC
CTAAGGTGAACAGGTGATATGGCACTCATCATGGTCAGACCTACAGAAAG
AAAAGAATTTTTTCCAACCCCCCCCCTCACTTGATAAAAGCTGAATTGGT
ATCTATGTGTTGCACCCTTACATGTAATGCCTTTAATACCTAGTTCTAGA
TGATCCCCCAACCTTGTTTCATGCCTTGTCTCCTTCCTGTTTCATCATCA
ATTAATTCTCTTAATAATACCTATAGCTACTTTCCCTGACTGCTTCCTTG
TTCTGTGTCTGATACTTTTTAAACATTCTCTTACTCAATGAACAAAAGAT
AAAAAGAATTTCTAAATGAGAAACTAAATATGGCTAATAAATTTGTAAAA
AACAAAAACAAAAGAAAAAATATTCAATTTCATCTAATAAATATGCATGC
AAAGCTGATGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_j09.b1 MSMg01no157_j09.b1 CHROMAT_FILE:
MSMg01no157_j09.b1 PHD_FILE: MSMg01no157_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:57 2005
         (277 letters)



>mm_chrX_139873715_139874391
          Length = 677

 Score =  528 bits (273), Expect = e-154
 Identities = 276/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaaaggctctggtaaaaaccattatgatcaggatgtccaggtcacatgaactgcttcc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tccaaaggctctggtaaaaaccattatgatcaggatgtccacgtcacatgaactgcttcc 260

                                                                       
Query: 61  ttgtccctgtgccttcctgccgctatgactttggggaaattataaatttttaaagagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtccctgtgccttcctgccgctatgactttggggaaattataaatttttaaagagcag 320

                                                                       
Query: 121 gttttcaaacacatcttgacctaagaagggagggagggatgcatttttgagtttcagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttcaaacacatcttgacctaagaagggagggagggatgcatttttgagtttcagagt 380

                                                                       
Query: 181 ccatgaaatgacatcatgatgcagctacttactcttaaggcacaccctggctcttgatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatgaaatgacatcatgatgcagctacttactcttaaggcacaccctggctcttgatca 440

                                                
Query: 241 aatgaccgaaatgtgagttgaggtggggggggggagg 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgaccgaaatgtgagttgaggtggggggggggagg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no157_j09.g1 MSMg01no157_j09.g1 CHROMAT_FILE:
MSMg01no157_j09.g1 PHD_FILE: MSMg01no157_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:57 2005
         (282 letters)



>mm_chrX_140050123_140050804
          Length = 682

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaactcaaagtagtaaattttattatggtcctttatatacatacctttatattttgtt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 actaactcaaagtagtagattttattatggtcctttatatacatacctttatattttgtt 423

                                                                       
Query: 61  ctccttcacctctctgttctactgcttctccctgtcctttaaatagttcccttcttcctc 120
           ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 422 ctccttcacctctctgttctactgcttttccctgtactttaaatagttcccttcttcctc 363

                                                                       
Query: 121 ctcatataattcatcattctgccaaaaagctcttttccaagtttaatttaagcagctttg 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 362 ctcatataattcatcattctgccagaaagctcttttccaagtttaatttaagcagctttg 303

                                                                       
Query: 181 taggctggaatcctttctactgtaatcctgatgggctagtacttcacctaaggtgaacag 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taggctgggatcctttctactgtaatcctgatgggctagtacttcacctaaggtgaacag 243

                                                     
Query: 241 gtgatatggcactcatcatggtcagacctacagaaagaaaag 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtgatatggcactcatcatggtcagacctacagaaagaaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)