BAC Information

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BAC

Clone NameMSMg01-158M13
ChromosomeX (Build37)
Map Location 49,332,463 - 49,478,749
singlet/doubletdoublet
Overlap geneGpc4
Upstream geneLOC100040422, Rap2c, LOC385355, Mbnl3, LOC665866, LOC385356, Hs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495
Downstream geneGpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158M13.T7 (MSMg01no158_m13.b1)MSMg01-158M13.TJ (MSMg01no158_m13.g1)
ACCAG358900AG358901
length703699
length of high quality
(start - end)
196 (117 - 312)283 (66 - 348)
definitionCHROMAT_FILE: MSMg01no158_m13.b1 PHD_FILE: MSMg01no158_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:22 2005CHROMAT_FILE: MSMg01no158_m13.g1 PHD_FILE: MSMg01no158_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,332,463 - 49,332,658)(49,478,467 - 49,478,749)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGTA
CAGCCATATAATGAAGAGACTCTGTTTTAAAAAATAAAAACAGAAACAAA
ACAACAGTATACCCCCACCCCACCAAACTGCTGATTTTGGTTTATGCTAG
TCGCTGTACTCCCACCCCTATCGCACCCCAGAGAAACAAGATTTTCCCAA
AGTAGTTCCTTCATTCTTAACTCTGGCTACATAAAAACATTCAGCTCTTT
TATGTGTTTCAGCTGTGATTGATGAATAGGTATCCATCCTCCTGTGACTG
AAGTTGCTGCTTGTTGTTGTAGTAGGTAAGCAATTGTATAAATTACCTCT
CATCTTAGTCACACAACATGTTTGTCAAAATGATTTCTTCTGAAATTGCA
AACGCCCCCCCAGAGCGCATGGAGAGAAATTGAGCTTGCTCCAAGGGGCT
GTGAATGCACCATTAAGAAGCCATAGAAAGAGATTAGGAATCCATCTGGT
GTGTTTGCACATCATTTAGTGCCATTTTGGGGCATTTCTGAAGCAGTGAC
AGTCACGGTGGCGAGTGACAGGAGGCGGTTCCACTAGCCATTAATGCGAT
ATACCAAGAGGCTATGCTTATCAGGGCATGCAGCTAGGGGACACTCTTCC
AGTGCTGACCTCAGTTCAGCAAAAACTCCATAAGCTCCAAAGCGAAATAG
GAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGGCATATCCCAATTTGTATTCTTAGCCAAGATG
GGTGCTTTTATTGCCCACCATTTATTTCTGGCCAAAAGAATTCATAAAGT
CCGCTTCTTATCCAGAAGAAAGCAACATGACATGACATTTTAAGTTTTAA
AAGTACATGAGGCAGGGAGTAGAAAGCACAGAGAACATTTTTCCTTCCTT
TCAAAAGTATTTTTAGATTAAATTTTGTTTTTACATGCGCGCTTGTTTTG
CTTGTGAATGTGTGTATCTGCCACATGTCTTTTGTGCCTGAGGCCAGGAG
AGTTTTTCAGATCCCCCGAAACTGGAGTTATAGATGATTGAGAGCCACTC
TGTGGCCCCCGCCAATCAAACCCAGGTCCTTTGCAAGAGCAACAAGTATT
CTTAAGCACTGAATCATCTCCCCAGCACTGGAACATATTTCTTAATCATT
CCTGATGATTCTATAGAGAACAGTACTCTGAGCCAGGCATAGCAGCTTAT
GCTTAGCACTTGCCTGTAACTCCAGCACCAGAAGTATCAGGAGTTCAAGG
TCAGTATCTCCTTGAGAGTGAGTTTGAAAATAGCCGCCTATGCCTTAGAA
AACAAAAAAGGGAGAGGGACAAGAGAACCCAGACAGCTTATATATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_m13.b1 MSMg01no158_m13.b1 CHROMAT_FILE:
MSMg01no158_m13.b1 PHD_FILE: MSMg01no158_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:22 2005
         (196 letters)



>mm_chrX_49332263_49332858
          Length = 596

 Score =  379 bits (196), Expect = e-110
 Identities = 196/196 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accccaccaaactgctgattttggtttatgctagtcgctgtactcccacccctatcgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accccaccaaactgctgattttggtttatgctagtcgctgtactcccacccctatcgcac 260

                                                                       
Query: 61  cccagagaaacaagattttcccaaagtagttccttcattcttaactctggctacataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagagaaacaagattttcccaaagtagttccttcattcttaactctggctacataaaa 320

                                                                       
Query: 121 acattcagctcttttatgtgtttcagctgtgattgatgaataggtatccatcctcctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattcagctcttttatgtgtttcagctgtgattgatgaataggtatccatcctcctgtg 380

                           
Query: 181 actgaagttgctgctt 196
           ||||||||||||||||
Sbjct: 381 actgaagttgctgctt 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no158_m13.g1 MSMg01no158_m13.g1 CHROMAT_FILE:
MSMg01no158_m13.g1 PHD_FILE: MSMg01no158_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:22 2005
         (283 letters)



>mm_chrX_49478267_49478949
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggcatatcccaatttgtattcttagccaagatgggtgcttttattgcccaccatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctggcatatcccaatttgtattcttagccaagatgggtgcttttattgcccaccatttat 424

                                                                       
Query: 61  ttctggccaaaagaattcataaagtccgcttcttatccagaagaaagcaacatgacatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttctggccaaaagaattcataaagtccgcttcttatccagaagaaagcaacatgacatga 364

                                                                       
Query: 121 cattttaagttttaaaagtacatgaggcagggagtagaaagcacagagaacatttttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cattttaagttttaaaagtacatgaggcagggagtagaaagcacagagaacatttttcct 304

                                                                       
Query: 181 tcctttcaaaagtatttttagattaaattttgtttttacatgcgcgcttgttttgcttgt 240
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 303 tcctttcaaaagtatttttagattaaattttgtttttacatgtgtgcttgttttgcttgt 244

                                                      
Query: 241 gaatgtgtgtatctgccacatgtcttttgtgcctgaggccagg 283
           | ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 gtatgtgtgtatctgccacatgtctgttgtgcctgaggccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)