BAC Information

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BAC

Clone NameMSMg01-158N10
ChromosomeX (Build37)
Map Location 103,683,493 - 103,683,800
singlet/doubletsinglet
Overlap genenone
Upstream geneCypt2, EG633570, Fgf16, Atrx, 2610529C04Rik, Cox7b, Atp7a, Tlr13, LOC671297, Pgk1, Taf9b, 5031408O05Rik, EG333563, LOC622494, Gm784
Downstream geneCysltr1, EG331493, LOC668490, LOC100042772, LOC100043263, Zcchc5, Gpr23, P2ry10, A630033H20Rik, Gpr174, LOC668502, LOC622613, LOC385404, Itm2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158N10.T7 (MSMg01no158_n10.b1)MSMg01-158N10.TJ (MSMg01no158_n10.g1)
ACCAG358940AG358941
length737738
length of high quality
(start - end)
312 (45 - 356)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no158_n10.b1 PHD_FILE: MSMg01no158_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:26 2005CHROMAT_FILE: MSMg01no158_n10.g1 PHD_FILE: MSMg01no158_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGTCAGCCTGGGCTGCATAGTGAATTCCAAAATACAAAGGGTTA
CAGTGTGAGACTTCTTCTTTTTTAAAAAACAAAGTTGTTAGAAATGCTAA
ACAATGCTTATTTGTTCTTTGGATGGATGTTTACACTTAAAGAACTAACT
TAACTTGGTTTTCATCCTGTAGTTGCATTGTAAATTTGGAACTTTCTTTA
GAATTTAACCCTCATTTGCCACACAATTCCGGTCAGTAAGGTTGCTGTTT
ATAAAATTGTTTGGAATAATGGTCGTATTTCCAGAAGTCCAACCCAAGAC
CTATTAATTTTATTCACCCCCCCCCATTTGTAGGATGTCACTATTTGCTC
AGATCGAGTACCCGCCCCCTCTAAGAGGTTTTCCCTATAGAGTTTCTTAG
GCTCAACTTGGCCACTAAACTTTGCCAAGGGTATTTTCAGTATATGGTCT
CTACATACCACTTTTTGAAGTTCTGTTTCACGGTTGCCCAGACTTATACT
ACATCCCCTTAAGTAGTAAATTCTGGTTAGTTGACAATTTATCTTGGGAA
TAAATTCTACCTCTGTATGAGCTTGCTTATGCCCCTACCAAGAAACTGTC
CCCAGTTCTCATACTCCGATTAAAACAACTCTCATGTAACCCCGAACACC
TTGCTTTGAATACTTTTACTATTTCAGCTACTTACCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCATAATATTGGACATAGTACTACCGGAGGATCC
AGCAATATTTTTTTTGCCCCCACCCCCCGAAGATGCCCCAACAGGTAAGA
AGGACACATGCTCCACCACGCACATAAAAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACATAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAGGAACTGGAACAATATGTACTCATTGATAAG
TGGATATTAGCCCAGAAACTTATGATACCCAAGATATAAGATATAATTTG
CTAAAACCATTAAACTCATGATAACGAAGACCGAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_n10.b1 MSMg01no158_n10.b1 CHROMAT_FILE:
MSMg01no158_n10.b1 PHD_FILE: MSMg01no158_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:26 2005
         (312 letters)



>mm_chrX_103683204_103683915
          Length = 712

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgtcagcctgggctgcatagtgaattccaaaatacaaagggttacagtgtga 64
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 597 gaattcagtgtcagcctgggctgcatagtgaattccagaacacaaagggttacagtgtga 538

                                                                       
Query: 65  gacttcttcttttttaaaaaacaaagttgttagaaatgctaaacaatgcttatttgttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gacttcttcttttttaaaaaacaaagttgttagaaatgctaaacaatgcttatttgttct 478

                                                                       
Query: 125 ttggatggatgtttacacttaaagaactaacttaacttggttttcatcctgtagttgcat 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 477 ttggatggatgtttacacttaaagaactaacttaacttgtttttcatcctgtagttgcat 418

                                                                       
Query: 185 tgtaaatttggaactttctttagaatttaaccctcatttgccacacaattccggtcagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgtaaatttggaactttctttagaatttaaccctcatttgccacacaattccggtcagta 358

                                                                       
Query: 245 aggttgctgtttataaaattgtttggaataatggtcgtatttccagaagtccaacccaag 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 357 aggttgctgtttataaaattgtttggaataaaggtcgtatttccagaagtccaacccaag 298

                   
Query: 305 acctatta 312
           ||||||||
Sbjct: 297 acctatta 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)