BAC Information

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BAC

Clone NameMSMg01-159K07
ChromosomeX (Build37)
Map Location 20,907,181 - 20,907,432
singlet/doubletsinglet
Overlap geneEG629024
Upstream geneLOC100043954, EG668996, Rp2h, LOC668283, Phf16, Rgn, Ndufb11, Rbm10, Ube1x, Pctk1, Usp11, LOC100043955, Araf, Syn1, Timp1, Cfp, Elk1, Uxt, A230072C01Rik, Zfp182, Spaca5, D930016N04Rik, Ssxa1, Gm1848, EG546268
Downstream geneEG331392, Agtr2, EG668997, Slc6a14, LOC100043180, LOC100043182, LOC100043956, EG436197, Ppia-psx_207.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159K07.T7 (MSMg01no159_k07.b1)MSMg01-159K07.TJ (MSMg01no159_k07.g1)
ACCAG359526AG359527
length742785
length of high quality
(start - end)
323 (44 - 366)255 (73 - 327)
definitionCHROMAT_FILE: MSMg01no159_k07.b1 PHD_FILE: MSMg01no159_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:24 2005CHROMAT_FILE: MSMg01no159_k07.g1 PHD_FILE: MSMg01no159_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:24 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAGCTGAAAACATTCCAAGAAGCAAAACTCCAGGCCAAGGTGCTTC
CTCTCATGACGGAAATGGCACCTGTAGTGATGATTCTACACAAACTCTTG
AACACAGAGGAAGTCTTCCCAAATATTTCTATGAACATATATTAGGTATT
TCAAAACCAGACAAAATTCACCTCAAGGAAATAAAAGTAAAAATCACTAA
CTCTTGCAGATAAAATGATCTTTACCAATACTAGCAAATCTTAGTATTTC
TCTTATTAGCAAAGCAAATTCAGCATTAAAAATGAGTTAGGCACATTCCC
AGTGACTGCATCTATTTTTCCCCTCCCCCCCACTCAGGGAACGTTATGGA
AGAGGGGACAGAACCACCGGTCAGGGAGATTGCTGTAAGATTGTGTCTCC
TAGTAATTTCAGAAGCAATAGCCATAAAAATCTCACCAACATGACTGCCC
AAACAGGAGCTGAACAAAGATAACTCTAACAGGCATGCTAAAGTGAAGTG
GGCAAAGTCCACAAGGCCTCAGCCCTACACAAAGAATGGCAGGCAACTGG
GGAATGCAGAGGAATAGTCTTCCTCGGGAAAGAGTATATCACTTGGCTAT
CCAATACCAAATGGTTAGCCCTGAAAATGTACATATACGTTACATTATAC
AGAGTGAGCAGGGCATATTCAGGAACATATATGTATATACAC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCTTGATGGCGGTATTGCTCCATGAAC
ACCAAGGGACCCTTATCCCAGGATCTCTCCTCCTCTGCCCAACTCTGAGG
AAAAAAACAGGCAATCAATTTGCCACAAGACTACAATGTGGCTGAGTCCA
ATCCTGGATTTTTTTGTGCAATGGCATGACTTTGGATCTTTCTGAATGGA
CCCTACTGCAGTTCTTTTAAGTACAGGCATGTGCATGTGTGTGCATGTGT
GTGTGTGTGTGTGTGTGTGTGTGTTTGTAAAACATATTCTCTTTAAAAAA
AAAAAAATTTTATAATTTCCAANACAATCCCCCAAAAANANATAAAAAAA
AAAAAAANATCTCCCCCTCTAAAAAAAAAAAAAAAAAAAAGTCTCTCGCG
CTGCGCCGTCATATTTTTCTCTCAAACCATTATTTATAACTCACCAATGT
TTTATCTTTAACAAATCCTCCACCTTACCACAATCTATTTATCTCCGCTT
TTTCCCCTCCCATATTTTTTTAACTTTTTATTTTTCCCCCATCTTTTTTT
TAACTAAACTATTTTCTTCTTCTAAATTTAATACACTAATCAAATATTAA
ACCTCATTCTCTACTATATATTTATTTTCTCCCTATTTATAAATACAAAA
ATTCTATTTTTCTTTTATCCCCACATTTAAAAATTATTTCCTCCTTAATT
AACCTAATAATCTTTATTACATTACCACCCTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_k07.g1 MSMg01no159_k07.g1 CHROMAT_FILE:
MSMg01no159_k07.g1 PHD_FILE: MSMg01no159_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:24 2005
         (255 letters)



>mm_chrX_20906981_20907635
          Length = 655

 Score =  464 bits (240), Expect = e-135
 Identities = 249/252 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttgatggcggtattgctccatgaacaccaagggacccttatcccaggatctctcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttgatggcggtattgctccatgaacaccaagggacccttatcccaggatctctcctc 260

                                                                       
Query: 61  ctctgcccaactctgaggaaaaaaacaggcaatcaatttgccacaagactacaatgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgcccaactctgaggaaaaaaacaggcaatcaatttgccacaagactacaatgtggc 320

                                                                       
Query: 121 tgagtccaatcctggatttttttgtgcaatggcatgactttggatctttctgaatggacc 180
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tgagttcaatcctggatttttttgtgcaatggtatgactttggatctttctgaatggacc 380

                                                                       
Query: 181 ctactgcagttcttttaagtacaggcatgtgcatgtgtgtgcatgtgtgtgtgtgtgtgt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ctactgcagttcttttaagtacaggcatgtgcatgtgtgtgcgtgtgtgtgtgtgtgtgt 440

                       
Query: 241 gtgtgtgtgtgt 252
           ||||||||||||
Sbjct: 441 gtgtgtgtgtgt 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)