BAC Information

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BAC

Clone NameMSMg01-159P06
ChromosomeX (Build37)
Map Location 106,616,129 - 106,616,419
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668516, Gm379, Brwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474
Downstream geneLOC245573, EG634340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159P06.T7 (MSMg01no159_p06.b1)MSMg01-159P06.TJ (MSMg01no159_p06.g1)
ACCAG359750AG359751
length728735
length of high quality
(start - end)
677 (46 - 722)289 (79 - 367)
definitionCHROMAT_FILE: MSMg01no159_p06.b1 PHD_FILE: MSMg01no159_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:46 2005CHROMAT_FILE: MSMg01no159_p06.g1 PHD_FILE: MSMg01no159_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAAACTTCAATCTAATGTTCTGTGAATCTGTTCCTATGAGTTTG
CTGAATGAAGCCACTCTGAAGATACTTGTACTAGGTGGTGGTCTACTATG
AGTATAGCAGAATATCATTAAGAATCATTTCAACCATTTTGCCTGAAATT
TTGGCTCTCTACTAGGTCTCTGTGCTATTCAGCCTCTCTTCCTGCCCCTC
CAGGAATTGAAGGCATTGGGCTTCCTCTTGTGGCATGAATCGTAATTTGG
GCCAGTGATTTGTTGGCCACTCACACAAGTTCTGCATCAACTTTATCCCA
GCACGTATTGCAGCAAGACAAACTGTACGTTGAAAGTTTCTGGACTGGTT
GATGCCCTAACCCCTCTGCTGTAAGTTTTGCCTGGTTACAGAAGAATTCC
AGTTCAAGCTCCATATCTATCCCCCTCCCCCTGATTACTGGGAGGTTTTG
TTGGTGTCATCTTCATAGATTTCAGGAAGTTTCCACTGCACTAGGTTTCT
ACCTCATGTCAAAGATCAGCTTTGACCCCACAGGGTAAACTGAAGCAGGC
AGCAAATGGGGGTCAGTGCTGAGTTTTGCTGATGGGGTTTGGTCCAAATA
CTGACATGGGCTGCCACCTGTGGCAGCCAATGATTAAAGAAGAATAAGGA
GGAAATCAAACATTTGCACACACACAGA
CGCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCAGAGTTCCAGTCCTTTA
AAAATATTTGAAACACACTTTCATGCTGTCATTGTACATTGCATGGTTTT
ATGGAAATATATTTTAATAGTTTTATTCTGGTAAGCAGTTCACAAAGATT
ACCCCACAAAGACTCTCCTGCCCTATTTAATGCATTGTTTCTTTCCCTCT
TTTCTCATTCTTTGTATTTCTCTTGTTGTTTTAACCTTTGCATATTTTTT
AAGCATCCCTTTATAAGATAAATCCAATTCTTCTTAGGGGGGTTGAGATG
TCAGTTGTGAGTTGTGTATAACTAACCCTATGACAAGATTCTGATACAAG
TTTCACAATATGGACTTTAAAGGTGGTTGCTTCTTAAAGATCCAATAAAA
TGCTAGGCATACTTTTGTTGATTAGAATTCAATAGTAGAATATCAGCTTA
GTAATATACATTACTTAGAACTTGGTGGAAAATTATGAATTTATATGAAA
AACATAAAAACATAAAATATTTAAACATAAAAAGAGAATTGTTGAAAAGA
TCTAGAAAAGAGGATAAACACACATACACACATGCACGCACACACACACA
CACACACACACACACACATACTTACACACCCTCAATACCTTTTGTGTAAT
GAACCTACAGAAATGTAACCAGACCCTGAACTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_p06.g1 MSMg01no159_p06.g1 CHROMAT_FILE:
MSMg01no159_p06.g1 PHD_FILE: MSMg01no159_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:47 2005
         (289 letters)



>mm_chrX_106615929_106616619
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%), Gaps = 2/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcagagttccagtcctttaaaaatatttgaaacacactttcatgctgtcattgtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcagagttccagtcctttaaaaatatttgaaacacactttcatgctgtcattgtaca 260

                                                                       
Query: 61  ttgcatggttttatggaaatatattttaatagttttattctggtaagcagttcacaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcatggttttatggaaatatattttaatagttttattctggtaagcagttcacaaaga 320

                                                                       
Query: 121 ttaccccacaaagactctcctgccctatttaatgcattgtttctttccctcttttctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaccccacaaagactctcctgccctatttaatgcattgtttctttccctcttttctcat 380

                                                                       
Query: 181 tctttgtatttctcttgttgttttaacctttgcatattttttaa-gcatccctttataag 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tctttgtatttctcttgttgttttaacctttgcatattttttaaagcatccctttataag 440

                                                              
Query: 240 ataaatccaattcttcttagggggg-ttgagatgtcagttgtgagttgtgt 289
           ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ataaatccaattcttcttagggggggttgagatgtcagttgtgagttgtgt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 691
Length adjustment: 9
Effective length of query: 280
Effective length of database: 682
Effective search space:   190960
Effective search space used:   190960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)